Yin Y - Search Results

1

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.

Morgunova E, Yin Y, Das PK, Jolma A, Zhu F, Popov A, Xu Y, Nilsson L, Taipale J. Morgunova E, et al. Among authors: yin y. Elife. 2018 Apr 11;7:e32963. doi: 10.7554/eLife.32963. Elife. 2018. PMID: 29638214 Free PMC article.

2

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution.

Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Nitta KR, et al. Among authors: yin y. Elife. 2015 Mar 17;4:e04837. doi: 10.7554/eLife.04837. Elife. 2015. PMID: 25779349 Free PMC article.

3

DNA-dependent formation of transcription factor pairs alters their binding specificity.

Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. Jolma A, et al. Among authors: yin y. Nature. 2015 Nov 19;527(7578):384-8. doi: 10.1038/nature15518. Epub 2015 Nov 9. Nature. 2015. PMID: 26550823

4

Structural insights into the DNA-binding specificity of E2F family transcription factors.

Morgunova E, Yin Y, Jolma A, Dave K, Schmierer B, Popov A, Eremina N, Nilsson L, Taipale J. Morgunova E, et al. Among authors: yin y. Nat Commun. 2015 Dec 3;6:10050. doi: 10.1038/ncomms10050. Nat Commun. 2015. PMID: 26632596 Free PMC article.

5

The Human Transcription Factors.

Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT. Lambert SA, et al. Among authors: yin y. Cell. 2018 Feb 8;172(4):650-665. doi: 10.1016/j.cell.2018.01.029. Cell. 2018. PMID: 29425488 Free article. Review.

6

The interaction landscape between transcription factors and the nucleosome.

Zhu F, Farnung L, Kaasinen E, Sahu B, Yin Y, Wei B, Dodonova SO, Nitta KR, Morgunova E, Taipale M, Cramer P, Taipale J. Zhu F, et al. Among authors: yin y. Nature. 2018 Oct;562(7725):76-81. doi: 10.1038/s41586-018-0549-5. Epub 2018 Sep 24. Nature. 2018. PMID: 30250250 Free PMC article.

7

Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.

Yang L, Orenstein Y, Jolma A, Yin Y, Taipale J, Shamir R, Rohs R. Yang L, et al. Among authors: yin y. Mol Syst Biol. 2017 Feb 6;13(2):910. doi: 10.15252/msb.20167238. Mol Syst Biol. 2017. PMID: 28167566 Free PMC article.

8

Impact of cytosine methylation on DNA binding specificities of human transcription factors.

Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Yin Y, et al. Science. 2017 May 5;356(6337):eaaj2239. doi: 10.1126/science.aaj2239. Science. 2017. PMID: 28473536 Free PMC article.

9

Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets.

Toivonen J, Kivioja T, Jolma A, Yin Y, Taipale J, Ukkonen E. Toivonen J, et al. Among authors: yin y. Nucleic Acids Res. 2018 May 4;46(8):e44. doi: 10.1093/nar/gky027. Nucleic Acids Res. 2018. PMID: 29385521 Free PMC article.

10

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences.

Jolma A, Zhang J, Mondragón E, Morgunova E, Kivioja T, Laverty KU, Yin Y, Zhu F, Bourenkov G, Morris Q, Hughes TR, Maher LJ 3rd, Taipale J. Jolma A, et al. Among authors: yin y. Genome Res. 2020 Jul;30(7):962-973. doi: 10.1101/gr.258848.119. Epub 2020 Jul 23. Genome Res. 2020. PMID: 32703884 Free PMC article.

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