Ma J - Search Results

1

Low-input and multiplexed microfluidic assay reveals epigenomic variation across cerebellum and prefrontal cortex.

Ma S, Hsieh YP, Ma J, Lu C. Ma S, et al. Among authors: ma j. Sci Adv. 2018 Apr 18;4(4):eaar8187. doi: 10.1126/sciadv.aar8187. eCollection 2018 Apr. Sci Adv. 2018. PMID: 29675472 Free PMC article.

2

BLESS 2: accurate, memory-efficient and fast error correction method.

Heo Y, Ramachandran A, Hwu WM, Ma J, Chen D. Heo Y, et al. Among authors: ma j. Bioinformatics. 2016 Aug 1;32(15):2369-71. doi: 10.1093/bioinformatics/btw146. Epub 2016 Mar 24. Bioinformatics. 2016. PMID: 27153708 Free PMC article.

3

Predicting CTCF-mediated chromatin loops using CTCF-MP.

Zhang R, Wang Y, Yang Y, Zhang Y, Ma J. Zhang R, et al. Among authors: ma j. Bioinformatics. 2018 Jul 1;34(13):i133-i141. doi: 10.1093/bioinformatics/bty248. Bioinformatics. 2018. PMID: 29949986 Free PMC article.

4

Revealing Hi-C subcompartments by imputing inter-chromosomal chromatin interactions.

Xiong K, Ma J. Xiong K, et al. Among authors: ma j. Nat Commun. 2019 Nov 7;10(1):5069. doi: 10.1038/s41467-019-12954-4. Nat Commun. 2019. PMID: 31699985 Free PMC article.

5

CHANGE-seq reveals genetic and epigenetic effects on CRISPR-Cas9 genome-wide activity.

Lazzarotto CR, Malinin NL, Li Y, Zhang R, Yang Y, Lee G, Cowley E, He Y, Lan X, Jividen K, Katta V, Kolmakova NG, Petersen CT, Qi Q, Strelcov E, Maragh S, Krenciute G, Ma J, Cheng Y, Tsai SQ. Lazzarotto CR, et al. Among authors: ma j. Nat Biotechnol. 2020 Nov;38(11):1317-1327. doi: 10.1038/s41587-020-0555-7. Epub 2020 Jun 15. Nat Biotechnol. 2020. PMID: 32541958 Free PMC article.

6

Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome.

Zhu X, Zhang Y, Wang Y, Tian D, Belmont AS, Swedlow JR, Ma J. Zhu X, et al. Among authors: ma j. Nat Methods. 2022 Aug;19(8):911-913. doi: 10.1038/s41592-022-01559-3. Nat Methods. 2022. PMID: 35864167 Free PMC article. No abstract available.

7

Exploiting sequence-based features for predicting enhancer-promoter interactions.

Yang Y, Zhang R, Singh S, Ma J. Yang Y, et al. Among authors: ma j. Bioinformatics. 2017 Jul 15;33(14):i252-i260. doi: 10.1093/bioinformatics/btx257. Bioinformatics. 2017. PMID: 28881991 Free PMC article.

8

Toward Recovering Allele-specific Cancer Genome Graphs.

Rajaraman A, Ma J. Rajaraman A, et al. Among authors: ma j. J Comput Biol. 2018 Jul;25(7):624-636. doi: 10.1089/cmb.2018.0022. Epub 2018 Apr 16. J Comput Biol. 2018. PMID: 29658776 Free PMC article.

9

A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert.

Farré M, Li Q, Zhou Y, Damas J, Chemnick LG, Kim J, Ryder OA, Ma J, Zhang G, Larkin DM, Lewin HA. Farré M, et al. Among authors: ma j. Gigascience. 2019 Feb 1;8(2):giy162. doi: 10.1093/gigascience/giy162. Gigascience. 2019. PMID: 30649288 Free PMC article.

10

An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi).

Farré M, Li Q, Darolti I, Zhou Y, Damas J, Proskuryakova AA, Kulemzina AI, Chemnick LG, Kim J, Ryder OA, Ma J, Graphodatsky AS, Zhang G, Larkin DM, Lewin HA. Farré M, et al. Among authors: ma j. Gigascience. 2019 Aug 1;8(8):giz090. doi: 10.1093/gigascience/giz090. Gigascience. 2019. PMID: 31367745 Free PMC article.

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