Gottardo R - Search Results

1

T Cell-Dependent Affinity Maturation and Innate Immune Pathways Differentially Drive Autoreactive B Cell Responses in Rheumatoid Arthritis.

Lu DR, McDavid AN, Kongpachith S, Lingampalli N, Glanville J, Ju CH, Gottardo R, Robinson WH. Lu DR, et al. Among authors: gottardo r. Arthritis Rheumatol. 2018 Nov;70(11):1732-1744. doi: 10.1002/art.40578. Epub 2018 Sep 24. Arthritis Rheumatol. 2018. PMID: 29855173 Free PMC article.

2

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

McDavid A, Finak G, Chattopadyay PK, Dominguez M, Lamoreaux L, Ma SS, Roederer M, Gottardo R. McDavid A, et al. Among authors: gottardo r. Bioinformatics. 2013 Feb 15;29(4):461-7. doi: 10.1093/bioinformatics/bts714. Epub 2012 Dec 24. Bioinformatics. 2013. PMID: 23267174 Free PMC article.

3

Highly multiplexed quantitation of gene expression on single cells.

Dominguez MH, Chattopadhyay PK, Ma S, Lamoreaux L, McDavid A, Finak G, Gottardo R, Koup RA, Roederer M. Dominguez MH, et al. Among authors: gottardo r. J Immunol Methods. 2013 May 31;391(1-2):133-45. doi: 10.1016/j.jim.2013.03.002. Epub 2013 Mar 13. J Immunol Methods. 2013. PMID: 23500781 Free PMC article.

4

Mixture models for single-cell assays with applications to vaccine studies.

Finak G, McDavid A, Chattopadhyay P, Dominguez M, De Rosa S, Roederer M, Gottardo R. Finak G, et al. Among authors: gottardo r. Biostatistics. 2014 Jan;15(1):87-101. doi: 10.1093/biostatistics/kxt024. Epub 2013 Jul 24. Biostatistics. 2014. PMID: 23887981 Free PMC article.

5

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells.

McDavid A, Dennis L, Danaher P, Finak G, Krouse M, Wang A, Webster P, Beechem J, Gottardo R. McDavid A, et al. Among authors: gottardo r. PLoS Comput Biol. 2014 Jul 17;10(7):e1003696. doi: 10.1371/journal.pcbi.1003696. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25032992 Free PMC article.

6

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R. Finak G, et al. Among authors: gottardo r. Genome Biol. 2015 Dec 10;16:278. doi: 10.1186/s13059-015-0844-5. Genome Biol. 2015. PMID: 26653891 Free PMC article.

7

The contribution of cell cycle to heterogeneity in single-cell RNA-seq data.

McDavid A, Finak G, Gottardo R. McDavid A, et al. Among authors: gottardo r. Nat Biotechnol. 2016 Jun 9;34(6):591-3. doi: 10.1038/nbt.3498. Nat Biotechnol. 2016. PMID: 27281413 Free PMC article. No abstract available.

8

Distinct activation thresholds of human conventional and innate-like memory T cells.

Slichter CK, McDavid A, Miller HW, Finak G, Seymour BJ, McNevin JP, Diaz G, Czartoski JL, McElrath MJ, Gottardo R, Prlic M. Slichter CK, et al. Among authors: gottardo r. JCI Insight. 2016 Jun 2;1(8):e86292. doi: 10.1172/jci.insight.86292. JCI Insight. 2016. PMID: 27331143 Free PMC article.

9

GRAPHICAL MODELS FOR ZERO-INFLATED SINGLE CELL GENE EXPRESSION.

McDavid A, Gottardo R, Simon N, Drton M. McDavid A, et al. Among authors: gottardo r. Ann Appl Stat. 2019 Jun;13(2):848-873. doi: 10.1214/18-AOAS1213. Epub 2019 Jun 17. Ann Appl Stat. 2019. PMID: 31388390 Free PMC article.

10

A Functional Toll-Interacting Protein Variant Is Associated with Bacillus Calmette-Guérin-Specific Immune Responses and Tuberculosis.

Shah JA, Musvosvi M, Shey M, Horne DJ, Wells RD, Peterson GJ, Cox JS, Daya M, Hoal EG, Lin L, Gottardo R, Hanekom WA, Scriba TJ, Hatherill M, Hawn TR. Shah JA, et al. Among authors: gottardo r. Am J Respir Crit Care Med. 2017 Aug 15;196(4):502-511. doi: 10.1164/rccm.201611-2346OC. Am J Respir Crit Care Med. 2017. PMID: 28463648 Free PMC article.

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