Bertrand D - Search Results

1

Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study.

Mac Aogáin M, Chandrasekaran R, Lim AYH, Low TB, Tan GL, Hassan T, Ong TH, Hui Qi Ng A, Bertrand D, Koh JY, Pang SL, Lee ZY, Gwee XW, Martinus C, Sio YY, Matta SA, Chew FT, Keir HR, Connolly JE, Abisheganaden JA, Koh MS, Nagarajan N, Chalmers JD, Chotirmall SH. Mac Aogáin M, et al. Among authors: bertrand d. Eur Respir J. 2018 Jul 27;52(1):1800766. doi: 10.1183/13993003.00766-2018. Print 2018 Jul. Eur Respir J. 2018. PMID: 29880655 Free PMC article.

2

Predicting Cancer Drug Response using a Recommender System.

Suphavilai C, Bertrand D, Nagarajan N. Suphavilai C, et al. Among authors: bertrand d. Bioinformatics. 2018 Nov 15;34(22):3907-3914. doi: 10.1093/bioinformatics/bty452. Bioinformatics. 2018. PMID: 29868820

3

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees.

Gao S, Bertrand D, Chia BK, Nagarajan N. Gao S, et al. Among authors: bertrand d. Genome Biol. 2016 May 11;17:102. doi: 10.1186/s13059-016-0951-y. Genome Biol. 2016. PMID: 27169502 Free PMC article.

4

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.

Bertrand D, Shaw J, Kalathiyappan M, Ng AHQ, Kumar MS, Li C, Dvornicic M, Soldo JP, Koh JY, Tong C, Ng OT, Barkham T, Young B, Marimuthu K, Chng KR, Sikic M, Nagarajan N. Bertrand D, et al. Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359005

5

ConsensusDriver Improves upon Individual Algorithms for Predicting Driver Alterations in Different Cancer Types and Individual Patients.

Bertrand D, Drissler S, Chia BK, Koh JY, Li C, Suphavilai C, Tan IB, Nagarajan N. Bertrand D, et al. Cancer Res. 2018 Jan 1;78(1):290-301. doi: 10.1158/0008-5472.CAN-17-1345. Epub 2017 Dec 19. Cancer Res. 2018. PMID: 29259006

6

Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners.

Molton JS, Lee IR, Bertrand D, Ding Y, Kalimuddin S, Lye DC, Nagarajan N, Gan YH, Archuleta S. Molton JS, et al. Among authors: bertrand d. Int J Infect Dis. 2021 Jun;107:1-4. doi: 10.1016/j.ijid.2021.04.012. Epub 2021 Apr 16. Int J Infect Dis. 2021. PMID: 33862216 Free article.

7

A MinION™-based pipeline for fast and cost-effective DNA barcoding.

Srivathsan A, Baloğlu B, Wang W, Tan WX, Bertrand D, Ng AHQ, Boey EJH, Koh JJY, Nagarajan N, Meier R. Srivathsan A, et al. Among authors: bertrand d. Mol Ecol Resour. 2018 Apr 19. doi: 10.1111/1755-0998.12890. Online ahead of print. Mol Ecol Resour. 2018. PMID: 29673082

8

Household transmission of carbapenemase-producing Enterobacteriaceae: a prospective cohort study.

Marimuthu K, Mo Y, Ling ML, Hernandez-Koutoucheva A, Fenlon SN, Bertrand D, Lye DC, Ang BSP, Perencevich E, Ng OT, Cooper BS, Nagarajan N, Chen SL, Barkham T. Marimuthu K, et al. Among authors: bertrand d. J Antimicrob Chemother. 2021 Apr 13;76(5):1299-1302. doi: 10.1093/jac/dkaa561. J Antimicrob Chemother. 2021. PMID: 33417711

9

Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects.

Kang JTL, Teo JJY, Bertrand D, Ng A, Ravikrishnan A, Yong M, Ng OT, Marimuthu K, Chen SL, Chng KR, Gan YH, Nagarajan N. Kang JTL, et al. Among authors: bertrand d. Nat Microbiol. 2022 Oct;7(10):1516-1524. doi: 10.1038/s41564-022-01221-w. Epub 2022 Sep 15. Nat Microbiol. 2022. PMID: 36109646 Free PMC article.

10

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets.

Wilm A, Aw PP, Bertrand D, Yeo GH, Ong SH, Wong CH, Khor CC, Petric R, Hibberd ML, Nagarajan N. Wilm A, et al. Among authors: bertrand d. Nucleic Acids Res. 2012 Dec;40(22):11189-201. doi: 10.1093/nar/gks918. Epub 2012 Oct 12. Nucleic Acids Res. 2012. PMID: 23066108 Free PMC article.

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