Allen JM - Search Results

1

aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data.

Allen JM, LaFrance R, Folk RA, Johnson KP, Guralnick RP. Allen JM, et al. Evol Bioinform Online. 2018 May 8;14:1176934318774546. doi: 10.1177/1176934318774546. eCollection 2018. Evol Bioinform Online. 2018. PMID: 29881251 Free PMC article. Review.

2

Rates of genomic divergence in humans, chimpanzees and their lice.

Johnson KP, Allen JM, Olds BP, Mugisha L, Reed DL, Paige KN, Pittendrigh BR. Johnson KP, et al. Among authors: allen jm. Proc Biol Sci. 2014 Jan 8;281(1777):20132174. doi: 10.1098/rspb.2013.2174. Print 2014 Feb 22. Proc Biol Sci. 2014. PMID: 24403325 Free PMC article.

3

aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data.

Allen JM, Huang DI, Cronk QC, Johnson KP. Allen JM, et al. BMC Bioinformatics. 2015 Mar 25;16(1):98. doi: 10.1186/s12859-015-0515-2. BMC Bioinformatics. 2015. PMID: 25887972 Free PMC article.

4

Novel Primers From Informative Nuclear Loci for Louse Molecular Phylogenetics (Insecta: Phthiraptera).

Sweet AD, Allen JM, Johnson KP. Sweet AD, et al. Among authors: allen jm. J Med Entomol. 2014 Nov 1;51(6):1122-6. doi: 10.1603/ME13218. Epub 2014 Nov 1. J Med Entomol. 2014. PMID: 26309297

5

Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia.

Bush SE, Weckstein JD, Gustafsson DR, Allen J, DiBlasi E, Shreve SM, Boldt R, Skeen HR, Johnson KP. Bush SE, et al. Mol Phylogenet Evol. 2016 Jan;94(Pt B):737-751. doi: 10.1016/j.ympev.2015.09.015. Epub 2015 Oct 9. Mol Phylogenet Evol. 2016. PMID: 26455895

6

Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia.

Bush SE, Weckstein JD, Gustafsson DR, Allen J, DiBlasi E, Shreve SM, Boldt R, Skeen HR, Johnson KP. Bush SE, et al. Data Brief. 2015 Nov 2;5:1078-91. doi: 10.1016/j.dib.2015.10.022. eCollection 2015 Dec. Data Brief. 2015. PMID: 26793754 Free PMC article.

7

Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura).

Boyd BM, Allen JM, Koga R, Fukatsu T, Sweet AD, Johnson KP, Reed DL. Boyd BM, et al. Among authors: allen jm. Appl Environ Microbiol. 2016 May 16;82(11):3185-97. doi: 10.1128/AEM.00282-16. Print 2016 Jun 1. Appl Environ Microbiol. 2016. PMID: 26994086 Free PMC article.

8

Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola).

Boyd BM, Allen JM, Nguyen NP, Sweet AD, Warnow T, Shapiro MD, Villa SM, Bush SE, Clayton DH, Johnson KP. Boyd BM, et al. Among authors: allen jm. Syst Biol. 2017 Nov 1;66(6):896-911. doi: 10.1093/sysbio/syx027. Syst Biol. 2017. PMID: 28108601 Free PMC article.

9

Phylogenomics from Whole Genome Sequences Using aTRAM.

Allen JM, Boyd B, Nguyen NP, Vachaspati P, Warnow T, Huang DI, Grady PGS, Bell KC, Cronk QCB, Mugisha L, Pittendrigh BR, Leonardi MS, Reed DL, Johnson KP. Allen JM, et al. Syst Biol. 2017 Sep 1;66(5):786-798. doi: 10.1093/sysbio/syw105. Syst Biol. 2017. PMID: 28123117

10

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice.

Boyd BM, Allen JM, Nguyen NP, Vachaspati P, Quicksall ZS, Warnow T, Mugisha L, Johnson KP, Reed DL. Boyd BM, et al. Among authors: allen jm. Mol Biol Evol. 2017 Jul 1;34(7):1743-1757. doi: 10.1093/molbev/msx117. Mol Biol Evol. 2017. PMID: 28419279 Free PMC article.

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