Guan Y - Search Results

1

Prioritizing predictive biomarkers for gene essentiality in cancer cells with mRNA expression data and DNA copy number profile.

Guan Y, Li T, Zhang H, Zhu F, Omenn GS. Guan Y, et al. Bioinformatics. 2018 Dec 1;34(23):3975-3982. doi: 10.1093/bioinformatics/bty467. Bioinformatics. 2018. PMID: 29912344 Free PMC article.

2

Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data.

Eksi R, Li HD, Menon R, Wen Y, Omenn GS, Kretzler M, Guan Y. Eksi R, et al. Among authors: guan y. PLoS Comput Biol. 2013;9(11):e1003314. doi: 10.1371/journal.pcbi.1003314. Epub 2013 Nov 7. PLoS Comput Biol. 2013. PMID: 24244129 Free PMC article.

3

Developmental transcriptome analysis of human erythropoiesis.

Shi L, Lin YH, Sierant MC, Zhu F, Cui S, Guan Y, Sartor MA, Tanabe O, Lim KC, Engel JD. Shi L, et al. Among authors: guan y. Hum Mol Genet. 2014 Sep 1;23(17):4528-42. doi: 10.1093/hmg/ddu167. Epub 2014 Apr 29. Hum Mol Genet. 2014. PMID: 24781209 Free PMC article.

4

A new class of protein cancer biomarker candidates: differentially expressed splice variants of ERBB2 (HER2/neu) and ERBB1 (EGFR) in breast cancer cell lines.

Omenn GS, Guan Y, Menon R. Omenn GS, et al. Among authors: guan y. J Proteomics. 2014 Jul 31;107:103-12. doi: 10.1016/j.jprot.2014.04.012. Epub 2014 May 5. J Proteomics. 2014. PMID: 24802673 Free PMC article. Review.

5

Biased, non-equivalent gene-proximal and -distal binding motifs of orphan nuclear receptor TR4 in primary human erythroid cells.

Shi L, Sierant MC, Gurdziel K, Zhu F, Cui S, Kolodziej KE, Strouboulis J, Guan Y, Tanabe O, Lim KC, Engel JD. Shi L, et al. Among authors: guan y. PLoS Genet. 2014 May 8;10(5):e1004339. doi: 10.1371/journal.pgen.1004339. eCollection 2014 May. PLoS Genet. 2014. PMID: 24811540 Free PMC article.

6

Predicting dynamic signaling network response under unseen perturbations.

Zhu F, Guan Y. Zhu F, et al. Among authors: guan y. Bioinformatics. 2014 Oct;30(19):2772-8. doi: 10.1093/bioinformatics/btu382. Epub 2014 Jun 11. Bioinformatics. 2014. PMID: 24919880 Free PMC article.

7

The emerging era of genomic data integration for analyzing splice isoform function.

Li HD, Menon R, Omenn GS, Guan Y. Li HD, et al. Among authors: guan y. Trends Genet. 2014 Aug;30(8):340-7. doi: 10.1016/j.tig.2014.05.005. Epub 2014 Jun 17. Trends Genet. 2014. PMID: 24951248 Free PMC article. Review.

8

Modeling dynamic functional relationship networks and application to ex vivo human erythroid differentiation.

Zhu F, Shi L, Li H, Eksi R, Engel JD, Guan Y. Zhu F, et al. Among authors: guan y. Bioinformatics. 2014 Dec 1;30(23):3325-33. doi: 10.1093/bioinformatics/btu542. Epub 2014 Aug 12. Bioinformatics. 2014. PMID: 25115705 Free PMC article.

9

Revisiting the identification of canonical splice isoforms through integration of functional genomics and proteomics evidence.

Li HD, Menon R, Omenn GS, Guan Y. Li HD, et al. Among authors: guan y. Proteomics. 2014 Dec;14(23-24):2709-18. doi: 10.1002/pmic.201400170. Epub 2014 Nov 17. Proteomics. 2014. PMID: 25265570 Free PMC article.

10

Regulatory network inferred using expression data of small sample size: application and validation in erythroid system.

Zhu F, Shi L, Engel JD, Guan Y. Zhu F, et al. Among authors: guan y. Bioinformatics. 2015 Aug 1;31(15):2537-44. doi: 10.1093/bioinformatics/btv186. Epub 2015 Apr 2. Bioinformatics. 2015. PMID: 25840044 Free PMC article.

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