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208 results

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Page 1
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.
Nattestad M, Goodwin S, Ng K, Baslan T, Sedlazeck FJ, Rescheneder P, Garvin T, Fang H, Gurtowski J, Hutton E, Tseng E, Chin CS, Beck T, Sundaravadanam Y, Kramer M, Antoniou E, McPherson JD, Hicks J, McCombie WR, Schatz MC. Nattestad M, et al. Among authors: schatz mc. Genome Res. 2018 Aug;28(8):1126-1135. doi: 10.1101/gr.231100.117. Epub 2018 Jun 28. Genome Res. 2018. PMID: 29954844 Free PMC article.
De novo gene disruptions in children on the autistic spectrum.
Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, Yamrom B, Lee YH, Narzisi G, Leotta A, Kendall J, Grabowska E, Ma B, Marks S, Rodgers L, Stepansky A, Troge J, Andrews P, Bekritsky M, Pradhan K, Ghiban E, Kramer M, Parla J, Demeter R, Fulton LL, Fulton RS, Magrini VJ, Ye K, Darnell JC, Darnell RB, Mardis ER, Wilson RK, Schatz MC, McCombie WR, Wigler M. Iossifov I, et al. Among authors: schatz mc. Neuron. 2012 Apr 26;74(2):285-99. doi: 10.1016/j.neuron.2012.04.009. Neuron. 2012. PMID: 22542183 Free PMC article.
Genotyping in the cloud with Crossbow.
Gurtowski J, Schatz MC, Langmead B. Gurtowski J, et al. Among authors: schatz mc. Curr Protoc Bioinformatics. 2012 Sep;Chapter 15:15.3.1-15.3.15. doi: 10.1002/0471250953.bi1503s39. Curr Protoc Bioinformatics. 2012. PMID: 22948728 Free PMC article.
Reducing INDEL calling errors in whole genome and exome sequencing data.
Fang H, Wu Y, Narzisi G, O'Rawe JA, Barrón LT, Rosenbaum J, Ronemus M, Iossifov I, Schatz MC, Lyon GJ. Fang H, et al. Among authors: schatz mc. Genome Med. 2014 Oct 28;6(10):89. doi: 10.1186/s13073-014-0089-z. eCollection 2014. Genome Med. 2014. PMID: 25426171 Free PMC article.
Extending reference assembly models.
Church DM, Schneider VA, Steinberg KM, Schatz MC, Quinlan AR, Chin CS, Kitts PA, Aken B, Marth GT, Hoffman MM, Herrero J, Mendoza ML, Durbin R, Flicek P. Church DM, et al. Among authors: schatz mc. Genome Biol. 2015 Jan 24;16(1):13. doi: 10.1186/s13059-015-0587-3. Genome Biol. 2015. PMID: 25651527 Free PMC article.
208 results