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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, Ghosh S, Giełdoń A, Golon L, He Y, Heo L, Hou J, Khan M, Khatib F, Khoury GA, Kieslich C, Kim DE, Krupa P, Lee GR, Li H, Li J, Lipska A, Liwo A, Maghrabi AHA, Mirdita M, Mirzaei S, Mozolewska MA, Onel M, Ovchinnikov S, Shah A, Shah U, Sidi T, Sieradzan AK, Ślusarz M, Ślusarz R, Smadbeck J, Tamamis P, Trieber N, Wirecki T, Yin Y, Zhang Y, Bacardit J, Baranowski M, Chapman N, Cooper S, Defelicibus A, Flatten J, Koepnick B, Popović Z, Zaborowski B, Baker D, Cheng J, Czaplewski C, Delbem ACB, Floudas C, Kloczkowski A, Ołdziej S, Levitt M, Scheraga H, Seok C, Söding J, Vishveshwara S, Xu D; Foldit Players consortium; Crivelli SN. Keasar C, et al. Among authors: mirdita m. Sci Rep. 2018 Jul 2;8(1):9939. doi: 10.1038/s41598-018-26812-8. Sci Rep. 2018. PMID: 29967418 Free PMC article.
LambdaPP: Fast and accessible protein-specific phenotype predictions.
Olenyi T, Marquet C, Heinzinger M, Kröger B, Nikolova T, Bernhofer M, Sändig P, Schütze K, Littmann M, Mirdita M, Steinegger M, Dallago C, Rost B. Olenyi T, et al. Among authors: mirdita m. Protein Sci. 2023 Jan;32(1):e4524. doi: 10.1002/pro.4524. Protein Sci. 2023. PMID: 36454227 Free PMC article.
DescribePROT: database of amino acid-level protein structure and function predictions.
Zhao B, Katuwawala A, Oldfield CJ, Dunker AK, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L. Zhao B, et al. Among authors: mirdita m. Nucleic Acids Res. 2021 Jan 8;49(D1):D298-D308. doi: 10.1093/nar/gkaa931. Nucleic Acids Res. 2021. PMID: 33119734 Free PMC article.
Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.
Gabler F, Nam SZ, Till S, Mirdita M, Steinegger M, Söding J, Lupas AN, Alva V. Gabler F, et al. Among authors: mirdita m. Curr Protoc Bioinformatics. 2020 Dec;72(1):e108. doi: 10.1002/cpbi.108. Curr Protoc Bioinformatics. 2020. PMID: 33315308
Fast and sensitive taxonomic assignment to metagenomic contigs.
Mirdita M, Steinegger M, Breitwieser F, Söding J, Levy Karin E. Mirdita M, et al. Bioinformatics. 2021 Sep 29;37(18):3029-3031. doi: 10.1093/bioinformatics/btab184. Bioinformatics. 2021. PMID: 33734313 Free PMC article.
28 results