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The Cytoscape Automation app article collection.
Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T. Demchak B, et al. Among authors: pico ar. F1000Res. 2018 Jun 20;7:800. doi: 10.12688/f1000research.15355.1. eCollection 2018. F1000Res. 2018. PMID: 29983926 Free PMC article.
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: pico ar. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
A travel guide to Cytoscape plugins.
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. Saito R, et al. Among authors: pico ar. Nat Methods. 2012 Nov;9(11):1069-76. doi: 10.1038/nmeth.2212. Epub 2012 Nov 6. Nat Methods. 2012. PMID: 23132118 Free PMC article.
Cytoscape app store.
Lotia S, Montojo J, Dong Y, Bader GD, Pico AR. Lotia S, et al. Among authors: pico ar. Bioinformatics. 2013 May 15;29(10):1350-1. doi: 10.1093/bioinformatics/btt138. Epub 2013 Apr 16. Bioinformatics. 2013. PMID: 23595664 Free PMC article.
enhancedGraphics: a Cytoscape app for enhanced node graphics.
Morris JH, Kuchinsky A, Ferrin TE, Pico AR. Morris JH, et al. Among authors: pico ar. F1000Res. 2014 Jul 1;3:147. doi: 10.12688/f1000research.4460.1. eCollection 2014. F1000Res. 2014. PMID: 25285206 Free PMC article.
setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.
Morris JH, Lotia S, Wu A, Doncheva NT, Albrecht M, Pico AR, Ferrin TE. Morris JH, et al. Among authors: pico ar. F1000Res. 2014 Jul 1;3:149. doi: 10.12688/f1000research.4392.2. eCollection 2014. F1000Res. 2014. PMID: 25352980 Free PMC article.
The Cytoscape app article collection.
Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T. Pico AR, et al. F1000Res. 2014 Jul 1;3:138. doi: 10.12688/f1000research.4642.1. eCollection 2014. F1000Res. 2014. PMID: 25580224 Free PMC article.
PSFC: a Pathway Signal Flow Calculator App for Cytoscape.
Nersisyan L, Johnson G, Riel-Mehan M, Pico A, Arakelyan A. Nersisyan L, et al. F1000Res. 2015 Aug 5;4:480. doi: 10.12688/f1000research.6706.2. eCollection 2015. F1000Res. 2015. PMID: 26834984 Free PMC article.
105 results