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Sequanix: a dynamic graphical interface for Snakemake workflows.
Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T. Desvillechabrol D, et al. Among authors: cokelaer t. Bioinformatics. 2018 Jun 1;34(11):1934-1936. doi: 10.1093/bioinformatics/bty034. Bioinformatics. 2018. PMID: 29361152 Free PMC article.
High acquisition rate of extended-spectrum β-lactamase-producing Enterobacteriaceae among French military personnel on mission abroad, without evidence of inter-individual transmission.
Maataoui N, Mayet A, Duron S, Delacour H, Mentré F, Laouenan C, Desvillechabrol D, Cokelaer T, Meynard JB, Ducher A, Andremont A, Armand-Lefèvre L, Mérens A. Maataoui N, et al. Among authors: cokelaer t. Clin Microbiol Infect. 2019 May;25(5):631.e1-631.e9. doi: 10.1016/j.cmi.2018.07.030. Epub 2018 Aug 9. Clin Microbiol Infect. 2019. PMID: 30099136 Free article.
Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad.
Armand-Lefèvre L, Rondinaud E, Desvillechabrol D, Mullaert J, Clermont O, Petitjean M, Ruppe E, Cokelaer T, Bouchier C, Tenaillon O, Ma L, Nooroya Y, Matheron S, The Voyag-R Study Group, Andremont A, Denamur E, Kennedy SP. Armand-Lefèvre L, et al. Among authors: cokelaer t. Microb Genom. 2021 Jul;7(7):000576. doi: 10.1099/mgen.0.000576. Microb Genom. 2021. PMID: 34279212 Free PMC article.
Low CCR5 expression protects HIV-specific CD4+ T cells of elite controllers from viral entry.
Claireaux M, Robinot R, Kervevan J, Patgaonkar M, Staropoli I, Brelot A, Nouël A, Gellenoncourt S, Tang X, Héry M, Volant S, Perthame E, Avettand-Fenoël V, Buchrieser J, Cokelaer T, Bouchier C, Ma L, Boufassa F, Hendou S, Libri V, Hasan M, Zucman D, de Truchis P, Schwartz O, Lambotte O, Chakrabarti LA. Claireaux M, et al. Among authors: cokelaer t. Nat Commun. 2022 Jan 26;13(1):521. doi: 10.1038/s41467-022-28130-0. Nat Commun. 2022. PMID: 35082297 Free PMC article.
BioConvert: a comprehensive format converter for life sciences.
Caro H, Dollin S, Biton A, Brancotte B, Desvillechabrol D, Dufresne Y, Li B, Kornobis E, Lemoine F, Maillet N, Perrin A, Traut N, Néron B, Cokelaer T. Caro H, et al. Among authors: cokelaer t. NAR Genom Bioinform. 2023 Aug 21;5(3):lqad074. doi: 10.1093/nargab/lqad074. eCollection 2023 Sep. NAR Genom Bioinform. 2023. PMID: 37608802 Free PMC article.
GDSCTools for mining pharmacogenomic interactions in cancer.
Cokelaer T, Chen E, Iorio F, Menden MP, Lightfoot H, Saez-Rodriguez J, Garnett MJ. Cokelaer T, et al. Bioinformatics. 2018 Apr 1;34(7):1226-1228. doi: 10.1093/bioinformatics/btx744. Bioinformatics. 2018. PMID: 29186349 Free PMC article.
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