Siedlecki P - Search Results

1

Development of a protein-ligand extended connectivity (PLEC) fingerprint and its application for binding affinity predictions.

Wójcikowski M, Kukiełka M, Stepniewska-Dziubinska MM, Siedlecki P. Wójcikowski M, et al. Among authors: siedlecki p. Bioinformatics. 2019 Apr 15;35(8):1334-1341. doi: 10.1093/bioinformatics/bty757. Bioinformatics. 2019. PMID: 30202917 Free PMC article.

2

e-LiSe--an online tool for finding needles in the '(Medline) haystack'.

Gladki A, Siedlecki P, Kaczanowski S, Zielenkiewicz P. Gladki A, et al. Among authors: siedlecki p. Bioinformatics. 2008 Apr 15;24(8):1115-7. doi: 10.1093/bioinformatics/btn086. Epub 2008 Mar 5. Bioinformatics. 2008. PMID: 18321884

3

DiSCuS: an open platform for (not only) virtual screening results management.

Wójcikowski M, Zielenkiewicz P, Siedlecki P. Wójcikowski M, et al. Among authors: siedlecki p. J Chem Inf Model. 2014 Jan 27;54(1):347-54. doi: 10.1021/ci400587f. Epub 2014 Jan 3. J Chem Inf Model. 2014. PMID: 24364790

4

Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field.

Wójcikowski M, Zielenkiewicz P, Siedlecki P. Wójcikowski M, et al. Among authors: siedlecki p. J Cheminform. 2015 Jun 22;7:26. doi: 10.1186/s13321-015-0078-2. eCollection 2015. J Cheminform. 2015. PMID: 26101548 Free PMC article.

5

Performance of machine-learning scoring functions in structure-based virtual screening.

Wójcikowski M, Ballester PJ, Siedlecki P. Wójcikowski M, et al. Among authors: siedlecki p. Sci Rep. 2017 Apr 25;7:46710. doi: 10.1038/srep46710. Sci Rep. 2017. PMID: 28440302 Free PMC article.

6

DeCAF-Discrimination, Comparison, Alignment Tool for 2D PHarmacophores.

Stepniewska-Dziubinska MM, Zielenkiewicz P, Siedlecki P. Stepniewska-Dziubinska MM, et al. Among authors: siedlecki p. Molecules. 2017 Jul 6;22(7):1128. doi: 10.3390/molecules22071128. Molecules. 2017. PMID: 28684712 Free PMC article.

7

Development and evaluation of a deep learning model for protein-ligand binding affinity prediction.

Stepniewska-Dziubinska MM, Zielenkiewicz P, Siedlecki P. Stepniewska-Dziubinska MM, et al. Among authors: siedlecki p. Bioinformatics. 2018 Nov 1;34(21):3666-3674. doi: 10.1093/bioinformatics/bty374. Bioinformatics. 2018. PMID: 29757353 Free PMC article.

8

Building Machine-Learning Scoring Functions for Structure-Based Prediction of Intermolecular Binding Affinity.

Wójcikowski M, Siedlecki P, Ballester PJ. Wójcikowski M, et al. Among authors: siedlecki p. Methods Mol Biol. 2019;2053:1-12. doi: 10.1007/978-1-4939-9752-7_1. Methods Mol Biol. 2019. PMID: 31452095

9

Improving detection of protein-ligand binding sites with 3D segmentation.

Stepniewska-Dziubinska MM, Zielenkiewicz P, Siedlecki P. Stepniewska-Dziubinska MM, et al. Among authors: siedlecki p. Sci Rep. 2020 Mar 19;10(1):5035. doi: 10.1038/s41598-020-61860-z. Sci Rep. 2020. PMID: 32193447 Free PMC article.

10

The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words.

Kaczanowski S, Siedlecki P, Zielenkiewicz P. Kaczanowski S, et al. Among authors: siedlecki p. BMC Bioinformatics. 2009 May 16;10:148. doi: 10.1186/1471-2105-10-148. BMC Bioinformatics. 2009. PMID: 19445703 Free PMC article.

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