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Fungal lifestyle reflected in serine protease repertoire.
Muszewska A, Stepniewska-Dziubinska MM, Steczkiewicz K, Pawlowska J, Dziedzic A, Ginalski K. Muszewska A, et al. Among authors: stepniewska dziubinska mm. Sci Rep. 2017 Aug 22;7(1):9147. doi: 10.1038/s41598-017-09644-w. Sci Rep. 2017. PMID: 28831173 Free PMC article.
Cut-and-Paste Transposons in Fungi with Diverse Lifestyles.
Muszewska A, Steczkiewicz K, Stepniewska-Dziubinska M, Ginalski K. Muszewska A, et al. Genome Biol Evol. 2017 Dec 1;9(12):3463-3477. doi: 10.1093/gbe/evx261. Genome Biol Evol. 2017. PMID: 29228286 Free PMC article.
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization.
Ahdritz G, Bouatta N, Floristean C, Kadyan S, Xia Q, Gerecke W, O'Donnell TJ, Berenberg D, Fisk I, Zanichelli N, Zhang B, Nowaczynski A, Wang B, Stepniewska-Dziubinska MM, Zhang S, Ojewole A, Guney ME, Biderman S, Watkins AM, Ra S, Lorenzo PR, Nivon L, Weitzner B, Ban YA, Chen S, Zhang M, Li C, Song SL, He Y, Sorger PK, Mostaque E, Zhang Z, Bonneau R, AlQuraishi M. Ahdritz G, et al. Among authors: stepniewska dziubinska mm. Nat Methods. 2024 Aug;21(8):1514-1524. doi: 10.1038/s41592-024-02272-z. Epub 2024 May 14. Nat Methods. 2024. PMID: 38744917