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Page 1
The jPOST environment: an integrated proteomics data repository and database.
Moriya Y, Kawano S, Okuda S, Watanabe Y, Matsumoto M, Takami T, Kobayashi D, Yamanouchi Y, Araki N, Yoshizawa AC, Tabata T, Iwasaki M, Sugiyama N, Tanaka S, Goto S, Ishihama Y. Moriya Y, et al. Among authors: yoshizawa ac. Nucleic Acids Res. 2019 Jan 8;47(D1):D1218-D1224. doi: 10.1093/nar/gky899. Nucleic Acids Res. 2019. PMID: 30295851 Free PMC article.
KAAS: an automatic genome annotation and pathway reconstruction server.
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. Moriya Y, et al. Among authors: yoshizawa ac. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25. Nucleic Acids Res. 2007. PMID: 17526522 Free PMC article.
ODB: a database for operon organizations, 2011 update.
Okuda S, Yoshizawa AC. Okuda S, et al. Among authors: yoshizawa ac. Nucleic Acids Res. 2011 Jan;39(Database issue):D552-5. doi: 10.1093/nar/gkq1090. Epub 2010 Nov 4. Nucleic Acids Res. 2011. PMID: 21051344 Free PMC article.
CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality.
Endo T, Ueno K, Yonezawa K, Mineta K, Hotta K, Satou Y, Yamada L, Ogasawara M, Takahashi H, Nakajima A, Nakachi M, Nomura M, Yaguchi J, Sasakura Y, Yamasaki C, Sera M, Yoshizawa AC, Imanishi T, Taniguchi H, Inaba K. Endo T, et al. Among authors: yoshizawa ac. Nucleic Acids Res. 2011 Jan;39(Database issue):D807-14. doi: 10.1093/nar/gkq1144. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071393 Free PMC article.
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.
Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, Okuda S, Tanaka M, Tokimatsu T, Yamanishi Y, Yoshizawa AC, Kanehisa M, Goto S. Nakaya A, et al. Among authors: yoshizawa ac. Nucleic Acids Res. 2013 Jan;41(Database issue):D353-7. doi: 10.1093/nar/gks1239. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193276 Free PMC article.
Integrated proteomics identified novel activation of dynein IC2-GR-COX-1 signaling in neurofibromatosis type I (NF1) disease model cells.
Hirayama M, Kobayashi D, Mizuguchi S, Morikawa T, Nagayama M, Midorikawa U, Wilson MM, Nambu AN, Yoshizawa AC, Kawano S, Araki N. Hirayama M, et al. Among authors: yoshizawa ac. Mol Cell Proteomics. 2013 May;12(5):1377-94. doi: 10.1074/mcp.M112.024802. Epub 2013 Jan 28. Mol Cell Proteomics. 2013. PMID: 23358504 Free PMC article.
Mass++: A Visualization and Analysis Tool for Mass Spectrometry.
Tanaka S, Fujita Y, Parry HE, Yoshizawa AC, Morimoto K, Murase M, Yamada Y, Yao J, Utsunomiya SI, Kajihara S, Fukuda M, Ikawa M, Tabata T, Takahashi K, Aoshima K, Nihei Y, Nishioka T, Oda Y, Tanaka K. Tanaka S, et al. Among authors: yoshizawa ac. J Proteome Res. 2014 Aug 1;13(8):3846-3853. doi: 10.1021/pr500155z. Epub 2014 Jul 7. J Proteome Res. 2014. PMID: 24965016
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