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Small-molecule-based regulation of RNA-delivered circuits in mammalian cells.
Wagner TE, Becraft JR, Bodner K, Teague B, Zhang X, Woo A, Porter E, Alburquerque B, Dobosh B, Andries O, Sanders NN, Beal J, Densmore D, Kitada T, Weiss R. Wagner TE, et al. Among authors: densmore d. Nat Chem Biol. 2018 Nov;14(11):1043-1050. doi: 10.1038/s41589-018-0146-9. Epub 2018 Oct 16. Nat Chem Biol. 2018. PMID: 30327560
Model-driven engineering of gene expression from RNA replicons.
Beal J, Wagner TE, Kitada T, Azizgolshani O, Parker JM, Densmore D, Weiss R. Beal J, et al. Among authors: densmore d. ACS Synth Biol. 2015 Jan 16;4(1):48-56. doi: 10.1021/sb500173f. Epub 2014 Jun 6. ACS Synth Biol. 2015. PMID: 24877739
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: densmore d. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
Sharing Structure and Function in Biological Design with SBOL 2.0.
Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ. Roehner N, et al. Among authors: densmore d. ACS Synth Biol. 2016 Jun 17;5(6):498-506. doi: 10.1021/acssynbio.5b00215. Epub 2016 May 4. ACS Synth Biol. 2016. PMID: 27111421
Reducing DNA context dependence in bacterial promoters.
Carr SB, Beal J, Densmore DM. Carr SB, et al. PLoS One. 2017 Apr 19;12(4):e0176013. doi: 10.1371/journal.pone.0176013. eCollection 2017. PLoS One. 2017. PMID: 28422998 Free PMC article.
Genetic circuit design automation for yeast.
Chen Y, Zhang S, Young EM, Jones TS, Densmore D, Voigt CA. Chen Y, et al. Among authors: densmore d. Nat Microbiol. 2020 Nov;5(11):1349-1360. doi: 10.1038/s41564-020-0757-2. Epub 2020 Aug 3. Nat Microbiol. 2020. PMID: 32747797
Genetic circuit design automation with Cello 2.0.
Jones TS, Oliveira SMD, Myers CJ, Voigt CA, Densmore D. Jones TS, et al. Among authors: densmore d. Nat Protoc. 2022 Apr;17(4):1097-1113. doi: 10.1038/s41596-021-00675-2. Epub 2022 Feb 23. Nat Protoc. 2022. PMID: 35197606 Review.
62 results