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Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.
Fang X, Monk JM, Nurk S, Akseshina M, Zhu Q, Gemmell C, Gianetto-Hill C, Leung N, Szubin R, Sanders J, Beck PL, Li W, Sandborn WJ, Gray-Owen SD, Knight R, Allen-Vercoe E, Palsson BO, Smarr L. Fang X, et al. Among authors: monk jm. Front Microbiol. 2018 Oct 30;9:2559. doi: 10.3389/fmicb.2018.02559. eCollection 2018. Front Microbiol. 2018. PMID: 30425690 Free PMC article.
Optimizing genome-scale network reconstructions.
Monk J, Nogales J, Palsson BO. Monk J, et al. Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. Nat Biotechnol. 2014. PMID: 24811519 No abstract available.
Genetics. Predicting microbial growth.
Monk J, Palsson BO. Monk J, et al. Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. Science. 2014. PMID: 24970063 No abstract available.
Model-driven discovery of underground metabolic functions in Escherichia coli.
Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM. Guzmán GI, et al. Among authors: monk jm. Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):929-34. doi: 10.1073/pnas.1414218112. Epub 2015 Jan 6. Proc Natl Acad Sci U S A. 2015. PMID: 25564669 Free PMC article.
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.
Yang L, Tan J, O'Brien EJ, Monk JM, Kim D, Li HJ, Charusanti P, Ebrahim A, Lloyd CJ, Yurkovich JT, Du B, Dräger A, Thomas A, Sun Y, Saunders MA, Palsson BO. Yang L, et al. Among authors: monk jm. Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10810-5. doi: 10.1073/pnas.1501384112. Epub 2015 Aug 10. Proc Natl Acad Sci U S A. 2015. PMID: 26261351 Free PMC article.
Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC.
Aziz RK, Khaw VL, Monk JM, Brunk E, Lewis R, Loh SI, Mishra A, Nagle AA, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Palsson BØ, Charusanti P. Aziz RK, et al. Among authors: monk jm. Front Microbiol. 2015 Sep 23;6:958. doi: 10.3389/fmicb.2015.00958. eCollection 2015. Front Microbiol. 2015. PMID: 26441892 Free PMC article.
153 results