Johnson MG - Search Results

1

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering.

Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, Leebens-Mack JH, Leitch IJ, Maurin O, Soltis DE, Soltis PS, Wong GK, Baker WJ, Wickett NJ. Johnson MG, et al. Syst Biol. 2019 Jul 1;68(4):594-606. doi: 10.1093/sysbio/syy086. Syst Biol. 2019. PMID: 30535394 Free PMC article.

2

A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta).

Johnson MG, Malley C, Goffinet B, Shaw AJ, Wickett NJ. Johnson MG, et al. Mol Phylogenet Evol. 2016 May;98:29-40. doi: 10.1016/j.ympev.2016.01.008. Epub 2016 Jan 23. Mol Phylogenet Evol. 2016. PMID: 26811877

3

Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery.

Gardner EM, Johnson MG, Ragone D, Wickett NJ, Zerega NJ. Gardner EM, et al. Among authors: johnson mg. Appl Plant Sci. 2016 Jul 13;4(7):apps.1600017. doi: 10.3732/apps.1600017. eCollection 2016 Jul. Appl Plant Sci. 2016. PMID: 27437173 Free PMC article.

4

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment.

Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ. Johnson MG, et al. Appl Plant Sci. 2016 Jul 12;4(7):apps.1600016. doi: 10.3732/apps.1600016. eCollection 2016 Jul. Appl Plant Sci. 2016. PMID: 27437175 Free PMC article.

5

Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae.

Medina R, Johnson M, Liu Y, Wilding N, Hedderson TA, Wickett N, Goffinet B. Medina R, et al. Mol Phylogenet Evol. 2018 Mar;120:240-247. doi: 10.1016/j.ympev.2017.12.002. Epub 2017 Dec 5. Mol Phylogenet Evol. 2018. PMID: 29222063

6

Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus.

Kates HR, Johnson MG, Gardner EM, Zerega NJC, Wickett NJ. Kates HR, et al. Among authors: johnson mg. Am J Bot. 2018 Mar;105(3):404-416. doi: 10.1002/ajb2.1068. Epub 2018 May 5. Am J Bot. 2018. PMID: 29729187 Free article.

7

A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.).

Laricchia KM, Johnson MG, Ragone D, Williams EW, Zerega NJC, Wickett NJ. Laricchia KM, et al. Among authors: johnson mg. Am J Bot. 2018 May;105(5):915-926. doi: 10.1002/ajb2.1095. Epub 2018 Jun 8. Am J Bot. 2018. PMID: 29882953 Free article.

8

Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above.

Villaverde T, Pokorny L, Olsson S, Rincón-Barrado M, Johnson MG, Gardner EM, Wickett NJ, Molero J, Riina R, Sanmartín I. Villaverde T, et al. Among authors: johnson mg. New Phytol. 2018 Oct;220(2):636-650. doi: 10.1111/nph.15312. Epub 2018 Jul 17. New Phytol. 2018. PMID: 30016546 Free article.

9

Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes.

Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B. Liu Y, et al. Among authors: johnson mg. Nat Commun. 2019 Apr 2;10(1):1485. doi: 10.1038/s41467-019-09454-w. Nat Commun. 2019. PMID: 30940807 Free PMC article.

10

Hyb-Seq for Flowering Plant Systematics.

Dodsworth S, Pokorny L, Johnson MG, Kim JT, Maurin O, Wickett NJ, Forest F, Baker WJ. Dodsworth S, et al. Among authors: johnson mg. Trends Plant Sci. 2019 Oct;24(10):887-891. doi: 10.1016/j.tplants.2019.07.011. Epub 2019 Aug 30. Trends Plant Sci. 2019. PMID: 31477409

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