Clark SJ - Search Results

1

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer.

Du Q, Bert SA, Armstrong NJ, Caldon CE, Song JZ, Nair SS, Gould CM, Luu PL, Peters T, Khoury A, Qu W, Zotenko E, Stirzaker C, Clark SJ. Du Q, et al. Among authors: clark sj. Nat Commun. 2019 Jan 24;10(1):416. doi: 10.1038/s41467-019-08302-1. Nat Commun. 2019. PMID: 30679435 Free PMC article.

2

Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

Warnecke PM, Stirzaker C, Melki JR, Millar DS, Paul CL, Clark SJ. Warnecke PM, et al. Among authors: clark sj. Nucleic Acids Res. 1997 Nov 1;25(21):4422-6. doi: 10.1093/nar/25.21.4422. Nucleic Acids Res. 1997. PMID: 9336479 Free PMC article.

3

Cytosines adjacent to methylated CpG sites can be partially resistant to conversion in genomic bisulfite sequencing leading to methylation artifacts.

Harrison J, Stirzaker C, Clark SJ. Harrison J, et al. Among authors: clark sj. Anal Biochem. 1998 Nov 1;264(1):129-32. doi: 10.1006/abio.1998.2833. Anal Biochem. 1998. PMID: 9784198 No abstract available.

4

Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells.

Song JZ, Stirzaker C, Harrison J, Melki JR, Clark SJ. Song JZ, et al. Among authors: clark sj. Oncogene. 2002 Feb 7;21(7):1048-61. doi: 10.1038/sj.onc.1205153. Oncogene. 2002. PMID: 11850822

5

Identification and resolution of artifacts in bisulfite sequencing.

Warnecke PM, Stirzaker C, Song J, Grunau C, Melki JR, Clark SJ. Warnecke PM, et al. Among authors: clark sj. Methods. 2002 Jun;27(2):101-7. doi: 10.1016/s1046-2023(02)00060-9. Methods. 2002. PMID: 12095266

6

Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives.

Rand K, Qu W, Ho T, Clark SJ, Molloy P. Rand K, et al. Among authors: clark sj. Methods. 2002 Jun;27(2):114-20. doi: 10.1016/s1046-2023(02)00062-2. Methods. 2002. PMID: 12095268

7

Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells.

Stirzaker C, Song JZ, Davidson B, Clark SJ. Stirzaker C, et al. Among authors: clark sj. Cancer Res. 2004 Jun 1;64(11):3871-7. doi: 10.1158/0008-5472.CAN-03-3690. Cancer Res. 2004. PMID: 15172996

8

Permissive transcriptional activity at the centromere through pockets of DNA hypomethylation.

Wong NC, Wong LH, Quach JM, Canham P, Craig JM, Song JZ, Clark SJ, Choo KH. Wong NC, et al. Among authors: clark sj. PLoS Genet. 2006 Feb;2(2):e17. doi: 10.1371/journal.pgen.0020017. Epub 2006 Feb 10. PLoS Genet. 2006. PMID: 16477312 Free PMC article.

9

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band.

Frigola J, Song J, Stirzaker C, Hinshelwood RA, Peinado MA, Clark SJ. Frigola J, et al. Among authors: clark sj. Nat Genet. 2006 May;38(5):540-9. doi: 10.1038/ng1781. Epub 2006 Apr 23. Nat Genet. 2006. PMID: 16642018

10

DNA methylation: bisulphite modification and analysis.

Clark SJ, Statham A, Stirzaker C, Molloy PL, Frommer M. Clark SJ, et al. Nat Protoc. 2006;1(5):2353-64. doi: 10.1038/nprot.2006.324. Nat Protoc. 2006. PMID: 17406479

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