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Gene tree correction guided by orthology.
Lafond M, Semeria M, Swenson KM, Tannier E, El-Mabrouk N. Lafond M, et al. BMC Bioinformatics. 2013;14 Suppl 15(Suppl 15):S5. doi: 10.1186/1471-2105-14-S15-S5. Epub 2013 Oct 15. BMC Bioinformatics. 2013. PMID: 24564227 Free PMC article.
Theory and practice of ultra-perfection.
Ouangraoua A, Bergeron A, Swenson KM. Ouangraoua A, et al. J Comput Biol. 2011 Sep;18(9):1219-30. doi: 10.1089/cmb.2011.0086. J Comput Biol. 2011. PMID: 21899427
The Kernel of Maximum Agreement Subtrees.
Swenson KM, Chen E, Pattengale ND, Sankoff D. Swenson KM, et al. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1023-31. doi: 10.1109/TCBB.2012.11. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22231622
Assisted transcriptome reconstruction and splicing orthology.
Blanquart S, Varré JS, Guertin P, Perrin A, Bergeron A, Swenson KM. Blanquart S, et al. BMC Genomics. 2016 Nov 11;17(Suppl 10):786. doi: 10.1186/s12864-016-3103-6. BMC Genomics. 2016. PMID: 28185551 Free PMC article.
266 results