Vilaça P - Search Results

1

Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies.

Pereira R, Vilaça P, Maia P, Nielsen J, Rocha I. Pereira R, et al. Among authors: vilaca p. ACS Synth Biol. 2019 May 17;8(5):976-988. doi: 10.1021/acssynbio.8b00248. Epub 2019 Apr 15. ACS Synth Biol. 2019. PMID: 30925047

2

OptFlux: an open-source software platform for in silico metabolic engineering.

Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M. Rocha I, et al. Among authors: vilaca p. BMC Syst Biol. 2010 Apr 19;4:45. doi: 10.1186/1752-0509-4-45. BMC Syst Biol. 2010. PMID: 20403172 Free PMC article.

3

A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information.

Vilaça P, Rocha I, Rocha M. Vilaça P, et al. Biosystems. 2011 Mar;103(3):435-41. doi: 10.1016/j.biosystems.2010.11.012. Epub 2010 Dec 7. Biosystems. 2011. PMID: 21144882

4

An integrated computational environment for elementary modes analysis of biochemical networks.

Maia P, Vilaça P, Rocha I, Pont M, Tomb JF, Rocha M. Maia P, et al. Among authors: vilaca p. Int J Data Min Bioinform. 2012;6(4):382-95. doi: 10.1504/ijdmb.2012.049292. Int J Data Min Bioinform. 2012. PMID: 23155769

5

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data.

Carreira R, Evangelista P, Maia P, Vilaça P, Pont M, Tomb JF, Rocha I, Rocha M. Carreira R, et al. Among authors: vilaca p. BMC Syst Biol. 2014 Dec 3;8:123. doi: 10.1186/s12918-014-0123-1. BMC Syst Biol. 2014. PMID: 25466481 Free PMC article.

6

Development and application of efficient pathway enumeration algorithms for metabolic engineering applications.

Liu F, Vilaça P, Rocha I, Rocha M. Liu F, et al. Among authors: vilaca p. Comput Methods Programs Biomed. 2015 Feb;118(2):134-46. doi: 10.1016/j.cmpb.2014.11.010. Epub 2014 Dec 4. Comput Methods Programs Biomed. 2015. PMID: 25580014 Free article.

7

Genome-Wide Semi-Automated Annotation of Transporter Systems.

Dias O, Gomes D, Vilaca P, Cardoso J, Rocha M, Ferreira EC, Rocha I. Dias O, et al. Among authors: vilaca p. IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):443-456. doi: 10.1109/TCBB.2016.2527647. Epub 2016 Feb 11. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 26887005 Free article.

8

Analyzing and Designing Cell Factories with OptFlux.

Vilaça P, Maia P, Giesteira H, Rocha I, Rocha M. Vilaça P, et al. Methods Mol Biol. 2018;1716:37-76. doi: 10.1007/978-1-4939-7528-0_2. Methods Mol Biol. 2018. PMID: 29222748

9

Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z.

Pereira B, Miguel J, Vilaça P, Soares S, Rocha I, Carneiro S. Pereira B, et al. Among authors: vilaca p. BMC Syst Biol. 2018 May 30;12(1):61. doi: 10.1186/s12918-018-0585-7. BMC Syst Biol. 2018. PMID: 29843739 Free PMC article.

10

Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate.

Ferreira S, Pereira R, Liu F, Vilaça P, Rocha I. Ferreira S, et al. Among authors: vilaca p. Biotechnol Biofuels. 2019 Sep 30;12:230. doi: 10.1186/s13068-019-1565-x. eCollection 2019. Biotechnol Biofuels. 2019. PMID: 31583016 Free PMC article.

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