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Page 1
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact.
Gladstone RA, Lo SW, Lees JA, Croucher NJ, van Tonder AJ, Corander J, Page AJ, Marttinen P, Bentley LJ, Ochoa TJ, Ho PL, du Plessis M, Cornick JE, Kwambana-Adams B, Benisty R, Nzenze SA, Madhi SA, Hawkins PA, Everett DB, Antonio M, Dagan R, Klugman KP, von Gottberg A, McGee L, Breiman RF, Bentley SD; Global Pneumococcal Sequencing Consortium. Gladstone RA, et al. Among authors: ochoa tj. EBioMedicine. 2019 May;43:338-346. doi: 10.1016/j.ebiom.2019.04.021. Epub 2019 Apr 16. EBioMedicine. 2019. PMID: 31003929 Free PMC article.
First report of Streptococcus pneumoniae serotype 6D in South America.
Mercado E, Srinivasan V, Hawkins P, Chochua S, Ochoa T, Beall B, McGee L. Mercado E, et al. J Clin Microbiol. 2011 May;49(5):2080-1. doi: 10.1128/JCM.00153-11. Epub 2011 Mar 23. J Clin Microbiol. 2011. PMID: 21430101 Free PMC article. No abstract available.
[Pneumococcal serotypes in carrier children prior to the introduction of anti-pneumococcal vaccines in Peru].
Mercado EH, Egoavil M, Horna SG, Torres N, Velásquez R, Castillo ME, Chaparro E, Hernández R, Silva W, Campos FE, Sáenz A, Hidalgo F, Letona C, Valencia ÁG, Cerpa R, López-de-Romaña B, Pando J, Torres B, Castillo F, Calle A, Rabanal S, Ochoa TJ. Mercado EH, et al. Among authors: ochoa tj. Rev Peru Med Exp Salud Publica. 2012 Mar;29(1):53-60. doi: 10.1590/s1726-46342012000100008. Rev Peru Med Exp Salud Publica. 2012. PMID: 22510907 Spanish.
Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing.
Hawkins P, Mercado E, Chochua S, Castillo ME, Reyes I, Chaparro E, Gladstone R, Bentley SD, Breiman RF, Metcalf BJ, Beall B, Ochoa TJ, McGee L. Hawkins P, et al. Among authors: ochoa tj. Int J Med Microbiol. 2017 Oct;307(7):415-421. doi: 10.1016/j.ijmm.2017.07.008. Epub 2017 Jul 22. Int J Med Microbiol. 2017. PMID: 28756964 Free PMC article.
[Antibiotic resistance and distribution of serotypes of invasive pneumococcal strains isolated from hospitalized adults in Lima, Peru].
Castro JD, Siccha SM, Egoavil M, Chaparro E, Hernandez R, Silva W, Águila OD, Saenz A, Campos F, Reyes I, Castillo ME, Ochoa TJ. Castro JD, et al. Among authors: ochoa tj. Rev Peru Med Exp Salud Publica. 2017 Oct-Dec;34(4):633-641. doi: 10.17843/rpmesp.2017.344.2884. Rev Peru Med Exp Salud Publica. 2017. PMID: 29364418 Free article. Spanish.
Invasive pneumococcal disease in hospitalised children from Lima, Peru before and after introduction of the 7-valent conjugated vaccine.
Luna-Muschi A, Castillo-Tokumori F, Deza MP, Mercado EH, Egoavil M, Sedano K, Castillo ME, Reyes I, Chaparro E, Hernández R, Silva W, Del Aguila O, Campos F, Saenz A, Ochoa TJ. Luna-Muschi A, et al. Among authors: ochoa tj. Epidemiol Infect. 2019 Jan;147:e91. doi: 10.1017/S0950268819000037. Epidemiol Infect. 2019. PMID: 30869013 Free PMC article.
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.
Lo SW, Gladstone RA, van Tonder AJ, Lees JA, du Plessis M, Benisty R, Givon-Lavi N, Hawkins PA, Cornick JE, Kwambana-Adams B, Law PY, Ho PL, Antonio M, Everett DB, Dagan R, von Gottberg A, Klugman KP, McGee L, Breiman RF, Bentley SD; Global Pneumococcal Sequencing Consortium. Lo SW, et al. Lancet Infect Dis. 2019 Jul;19(7):759-769. doi: 10.1016/S1473-3099(19)30297-X. Epub 2019 Jun 10. Lancet Infect Dis. 2019. PMID: 31196809 Free PMC article.
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa.
Lo SW, Gladstone RA, van Tonder AJ, Du Plessis M, Cornick JE, Hawkins PA, Madhi SA, Nzenze SA, Kandasamy R, Ravikumar KL, Elmdaghri N, Kwambana-Adams B, Almeida SCG, Skoczynska A, Egorova E, Titov L, Saha SK, Paragi M, Everett DB, Antonio M, Klugman KP, Li Y, Metcalf BJ, Beall B, McGee L, Breiman RF, Bentley SD, von Gottberg A; Global Pneumococcal Sequencing Consortium. Lo SW, et al. J Antimicrob Chemother. 2020 Mar 1;75(3):512-520. doi: 10.1093/jac/dkz477. J Antimicrob Chemother. 2020. PMID: 31789384 Free PMC article.
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.
Gladstone RA, Lo SW, Goater R, Yeats C, Taylor B, Hadfield J, Lees JA, Croucher NJ, van Tonder AJ, Bentley LJ, Quah FX, Blaschke AJ, Pershing NL, Byington CL, Balaji V, Hryniewicz W, Sigauque B, Ravikumar KL, Almeida SCG, Ochoa TJ, Ho PL, du Plessis M, Ndlangisa KM, Cornick JE, Kwambana-Adams B, Benisty R, Nzenze SA, Madhi SA, Hawkins PA, Pollard AJ, Everett DB, Antonio M, Dagan R, Klugman KP, von Gottberg A, Metcalf BJ, Li Y, Beall BW, McGee L, Breiman RF, Aanensen DM, Bentley SD, The Global Pneumococcal Sequencing Consortium. Gladstone RA, et al. Among authors: ochoa tj. Microb Genom. 2020 May;6(5):e000357. doi: 10.1099/mgen.0.000357. Epub 2020 Apr 29. Microb Genom. 2020. PMID: 32375991 Free PMC article.
175 results