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Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV).
McNaughton AL, Roberts HE, Bonsall D, de Cesare M, Mokaya J, Lumley SF, Golubchik T, Piazza P, Martin JB, de Lara C, Brown A, Ansari MA, Bowden R, Barnes E, Matthews PC. McNaughton AL, et al. Among authors: bowden r. Sci Rep. 2019 May 8;9(1):7081. doi: 10.1038/s41598-019-43524-9. Sci Rep. 2019. PMID: 31068626 Free PMC article.
Multilocus sequence typing of Clostridium difficile.
Griffiths D, Fawley W, Kachrimanidou M, Bowden R, Crook DW, Fung R, Golubchik T, Harding RM, Jeffery KJ, Jolley KA, Kirton R, Peto TE, Rees G, Stoesser N, Vaughan A, Walker AS, Young BC, Wilcox M, Dingle KE. Griffiths D, et al. Among authors: bowden r. J Clin Microbiol. 2010 Mar;48(3):770-8. doi: 10.1128/JCM.01796-09. Epub 2009 Dec 30. J Clin Microbiol. 2010. PMID: 20042623 Free PMC article.
Recombination and population structure in Salmonella enterica.
Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly P. Didelot X, et al. Among authors: bowden r. PLoS Genet. 2011 Jul;7(7):e1002191. doi: 10.1371/journal.pgen.1002191. Epub 2011 Jul 28. PLoS Genet. 2011. PMID: 21829375 Free PMC article.
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease.
Young BC, Golubchik T, Batty EM, Fung R, Larner-Svensson H, Votintseva AA, Miller RR, Godwin H, Knox K, Everitt RG, Iqbal Z, Rimmer AJ, Cule M, Ip CL, Didelot X, Harding RM, Donnelly P, Peto TE, Crook DW, Bowden R, Wilson DJ. Young BC, et al. Among authors: bowden r. Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4550-5. doi: 10.1073/pnas.1113219109. Epub 2012 Mar 5. Proc Natl Acad Sci U S A. 2012. PMID: 22393007 Free PMC article.
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance.
Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TE, Walker AS, Crook DW. Eyre DW, et al. Among authors: bowden r. BMJ Open. 2012 Jun 6;2(3):e001124. doi: 10.1136/bmjopen-2012-001124. Print 2012. BMJ Open. 2012. PMID: 22674929 Free PMC article.
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.
Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE. Walker TM, et al. Among authors: bowden r. Lancet Infect Dis. 2013 Feb;13(2):137-46. doi: 10.1016/S1473-3099(12)70277-3. Epub 2012 Nov 15. Lancet Infect Dis. 2013. PMID: 23158499 Free PMC article.
Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing.
Dingle KE, Didelot X, Ansari MA, Eyre DW, Vaughan A, Griffiths D, Ip CL, Batty EM, Golubchik T, Bowden R, Jolley KA, Hood DW, Fawley WN, Walker AS, Peto TE, Wilcox MH, Crook DW. Dingle KE, et al. Among authors: bowden r. J Infect Dis. 2013 Feb 15;207(4):675-86. doi: 10.1093/infdis/jis734. Epub 2012 Nov 29. J Infect Dis. 2013. PMID: 23204167 Free PMC article.
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission.
Didelot X, Eyre DW, Cule M, Ip CL, Ansari MA, Griffiths D, Vaughan A, O'Connor L, Golubchik T, Batty EM, Piazza P, Wilson DJ, Bowden R, Donnelly PJ, Dingle KE, Wilcox M, Walker AS, Crook DW, Peto TE, Harding RM. Didelot X, et al. Among authors: bowden r. Genome Biol. 2012 Dec 21;13(12):R118. doi: 10.1186/gb-2012-13-12-r118. Genome Biol. 2012. PMID: 23259504 Free PMC article.
Within-host evolution of Staphylococcus aureus during asymptomatic carriage.
Golubchik T, Batty EM, Miller RR, Farr H, Young BC, Larner-Svensson H, Fung R, Godwin H, Knox K, Votintseva A, Everitt RG, Street T, Cule M, Ip CL, Didelot X, Peto TE, Harding RM, Wilson DJ, Crook DW, Bowden R. Golubchik T, et al. Among authors: bowden r. PLoS One. 2013 May 1;8(5):e61319. doi: 10.1371/journal.pone.0061319. Print 2013. PLoS One. 2013. PMID: 23658690 Free PMC article.
594 results