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Cram-JS: reference-based decompression in node and the browser.
Buels R, Dider S, Diesh C, Robinson J, Holmes I. Buels R, et al. Among authors: dider s. Bioinformatics. 2019 Nov 1;35(21):4451-4452. doi: 10.1093/bioinformatics/btz384. Bioinformatics. 2019. PMID: 31099383 Free PMC article.
Machine Boss: rapid prototyping of bioinformatic automata.
Silvestre-Ryan J, Wang Y, Sharma M, Lin S, Shen Y, Dider S, Holmes I. Silvestre-Ryan J, et al. Among authors: dider s. Bioinformatics. 2021 Apr 9;37(1):29-35. doi: 10.1093/bioinformatics/btaa633. Bioinformatics. 2021. PMID: 32683444 Free PMC article.
JBrowse 2: a modular genome browser with views of synteny and structural variation.
Diesh C, Stevens GJ, Xie P, De Jesus Martinez T, Hershberg EA, Leung A, Guo E, Dider S, Zhang J, Bridge C, Hogue G, Duncan A, Morgan M, Flores T, Bimber BN, Haw R, Cain S, Buels RM, Stein LD, Holmes IH. Diesh C, et al. Among authors: dider s. Genome Biol. 2023 Apr 17;24(1):74. doi: 10.1186/s13059-023-02914-z. Genome Biol. 2023. PMID: 37069644 Free PMC article.