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Cram-JS: reference-based decompression in node and the browser.
Buels R, Dider S, Diesh C, Robinson J, Holmes I. Buels R, et al. Among authors: holmes i. Bioinformatics. 2019 Nov 1;35(21):4451-4452. doi: 10.1093/bioinformatics/btz384. Bioinformatics. 2019. PMID: 31099383 Free PMC article.
JBrowse: a next-generation genome browser.
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. Skinner ME, et al. Genome Res. 2009 Sep;19(9):1630-8. doi: 10.1101/gr.094607.109. Epub 2009 Jul 1. Genome Res. 2009. PMID: 19570905 Free PMC article.
Setting up the JBrowse genome browser.
Skinner ME, Holmes IH. Skinner ME, et al. Curr Protoc Bioinformatics. 2010 Dec;Chapter 9:Unit 9.13. doi: 10.1002/0471250953.bi0913s32. Curr Protoc Bioinformatics. 2010. PMID: 21154710 Free PMC article.
Visualizing next-generation sequencing data with JBrowse.
Westesson O, Skinner M, Holmes I. Westesson O, et al. Among authors: holmes i. Brief Bioinform. 2013 Mar;14(2):172-7. doi: 10.1093/bib/bbr078. Epub 2012 Mar 12. Brief Bioinform. 2013. PMID: 22411711 Free PMC article.
Web Apollo: a web-based genomic annotation editing platform.
Lee E, Helt GA, Reese JT, Munoz-Torres MC, Childers CP, Buels RM, Stein L, Holmes IH, Elsik CG, Lewis SE. Lee E, et al. Genome Biol. 2013 Aug 30;14(8):R93. doi: 10.1186/gb-2013-14-8-r93. Genome Biol. 2013. PMID: 24000942 Free PMC article.
JBrowse: a dynamic web platform for genome visualization and analysis.
Buels R, Yao E, Diesh CM, Hayes RD, Munoz-Torres M, Helt G, Goodstein DM, Elsik CG, Lewis SE, Stein L, Holmes IH. Buels R, et al. Genome Biol. 2016 Apr 12;17:66. doi: 10.1186/s13059-016-0924-1. Genome Biol. 2016. PMID: 27072794 Free PMC article.
283 results