Abnousi A - Search Results

1

Publisher Correction: Sensory experience remodels genome architecture in neural circuit to drive motor learning.

Yamada T, Yang Y, Valnegri P, Juric I, Abnousi A, Markwalter KH, Guthrie AN, Godec A, Oldenborg A, Hu M, Holy TE, Bonni A. Yamada T, et al. Among authors: abnousi a. Nature. 2019 Jun;570(7760):E33. doi: 10.1038/s41586-019-1268-2. Nature. 2019. PMID: 31114059

2

Sensory experience remodels genome architecture in neural circuit to drive motor learning.

Yamada T, Yang Y, Valnegri P, Juric I, Abnousi A, Markwalter KH, Guthrie AN, Godec A, Oldenborg A, Hu M, Holy TE, Bonni A. Yamada T, et al. Among authors: abnousi a. Nature. 2019 May;569(7758):708-713. doi: 10.1038/s41586-019-1190-7. Epub 2019 May 8. Nature. 2019. PMID: 31068695 Free PMC article.

3

Cell-type-specific 3D epigenomes in the developing human cortex.

Song M, Pebworth MP, Yang X, Abnousi A, Fan C, Wen J, Rosen JD, Choudhary MNK, Cui X, Jones IR, Bergenholtz S, Eze UC, Juric I, Li B, Maliskova L, Lee J, Liu W, Pollen AA, Li Y, Wang T, Hu M, Kriegstein AR, Shen Y. Song M, et al. Among authors: abnousi a. Nature. 2020 Nov;587(7835):644-649. doi: 10.1038/s41586-020-2825-4. Epub 2020 Oct 14. Nature. 2020. PMID: 33057195 Free PMC article.

4

An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome.

Zhu C, Yu M, Huang H, Juric I, Abnousi A, Hu R, Lucero J, Behrens MM, Hu M, Ren B. Zhu C, et al. Among authors: abnousi a. Nat Struct Mol Biol. 2019 Nov;26(11):1063-1070. doi: 10.1038/s41594-019-0323-x. Epub 2019 Nov 6. Nat Struct Mol Biol. 2019. PMID: 31695190 Free PMC article.

5

Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq).

Yu M, Juric I, Abnousi A, Hu M, Ren B. Yu M, et al. Among authors: abnousi a. Methods Mol Biol. 2021;2351:181-199. doi: 10.1007/978-1-0716-1597-3_10. Methods Mol Biol. 2021. PMID: 34382190

6

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.

Juric I, Yu M, Abnousi A, Raviram R, Fang R, Zhao Y, Zhang Y, Qiu Y, Yang Y, Li Y, Ren B, Hu M. Juric I, et al. Among authors: abnousi a. PLoS Comput Biol. 2019 Apr 15;15(4):e1006982. doi: 10.1371/journal.pcbi.1006982. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30986246 Free PMC article.

7

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.

Lagler TM, Abnousi A, Hu M, Yang Y, Li Y. Lagler TM, et al. Among authors: abnousi a. Am J Hum Genet. 2021 Feb 4;108(2):257-268. doi: 10.1016/j.ajhg.2021.01.009. Am J Hum Genet. 2021. PMID: 33545029 Free PMC article.

8

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data.

Yu M, Abnousi A, Zhang Y, Li G, Lee L, Chen Z, Fang R, Lagler TM, Yang Y, Wen J, Sun Q, Li Y, Ren B, Hu M. Yu M, et al. Among authors: abnousi a. Nat Methods. 2021 Sep;18(9):1056-1059. doi: 10.1038/s41592-021-01231-2. Epub 2021 Aug 26. Nat Methods. 2021. PMID: 34446921 Free PMC article.

9

Circular ecDNA promotes accessible chromatin and high oncogene expression.

Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, Luebeck J, Rajkumar U, Diao Y, Li B, Zhang W, Jameson N, Corces MR, Granja JM, Chen X, Coruh C, Abnousi A, Houston J, Ye Z, Hu R, Yu M, Kim H, Law JA, Verhaak RGW, Hu M, Furnari FB, Chang HY, Ren B, Bafna V, Mischel PS. Wu S, et al. Among authors: abnousi a. Nature. 2019 Nov;575(7784):699-703. doi: 10.1038/s41586-019-1763-5. Epub 2019 Nov 20. Nature. 2019. PMID: 31748743 Free PMC article.

10

A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.

Huang L, Yang Y, Li G, Jiang M, Wen J, Abnousi A, Rosen JD, Hu M, Li Y. Huang L, et al. Among authors: abnousi a. Brief Bioinform. 2022 May 13;23(3):bbac145. doi: 10.1093/bib/bbac145. Brief Bioinform. 2022. PMID: 35488276 Free PMC article.

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