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Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer.
Yachida S, Mizutani S, Shiroma H, Shiba S, Nakajima T, Sakamoto T, Watanabe H, Masuda K, Nishimoto Y, Kubo M, Hosoda F, Rokutan H, Matsumoto M, Takamaru H, Yamada M, Matsuda T, Iwasaki M, Yamaji T, Yachida T, Soga T, Kurokawa K, Toyoda A, Ogura Y, Hayashi T, Hatakeyama M, Nakagama H, Saito Y, Fukuda S, Shibata T, Yamada T. Yachida S, et al. Among authors: toyoda a. Nat Med. 2019 Jun;25(6):968-976. doi: 10.1038/s41591-019-0458-7. Epub 2019 Jun 6. Nat Med. 2019. PMID: 31171880
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, Taylor TD, Noguchi H, Mori H, Ogura Y, Ehrlich DS, Itoh K, Takagi T, Sakaki Y, Hayashi T, Hattori M. Kurokawa K, et al. Among authors: toyoda a. DNA Res. 2007 Aug 31;14(4):169-81. doi: 10.1093/dnares/dsm018. Epub 2007 Oct 3. DNA Res. 2007. PMID: 17916580 Free PMC article.
Complete Genome Sequence of Mycobacterium ulcerans subsp. shinshuense.
Yoshida M, Nakanaga K, Ogura Y, Toyoda A, Ooka T, Kazumi Y, Mitarai S, Ishii N, Hayashi T, Hoshino Y. Yoshida M, et al. Among authors: toyoda a. Genome Announc. 2016 Sep 29;4(5):e01050-16. doi: 10.1128/genomeA.01050-16. Genome Announc. 2016. PMID: 27688344 Free PMC article.
Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic.
Nakanaga K, Ogura Y, Toyoda A, Yoshida M, Fukano H, Fujiwara N, Miyamoto Y, Nakata N, Kazumi Y, Maeda S, Ooka T, Goto M, Tanigawa K, Mitarai S, Suzuki K, Ishii N, Ato M, Hayashi T, Hoshino Y. Nakanaga K, et al. Among authors: toyoda a. Sci Rep. 2018 May 29;8(1):8218. doi: 10.1038/s41598-018-26425-1. Sci Rep. 2018. PMID: 29844323 Free PMC article.
Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28.
Nakamura K, Murase K, Sato MP, Toyoda A, Itoh T, Mainil JG, Piérard D, Yoshino S, Kimata K, Isobe J, Seto K, Etoh Y, Narimatsu H, Saito S, Yatsuyanagi J, Lee K, Iyoda S, Ohnishi M, Ooka T, Gotoh Y, Ogura Y, Hayashi T. Nakamura K, et al. Among authors: toyoda a. Microb Genom. 2020 Jan;6(1):e000323. doi: 10.1099/mgen.0.000323. Microb Genom. 2020. PMID: 31935184 Free PMC article.
557 results