Gibson TE - Search Results

1

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model.

Hsu BB, Gibson TE, Yeliseyev V, Liu Q, Lyon L, Bry L, Silver PA, Gerber GK. Hsu BB, et al. Among authors: gibson te. Cell Host Microbe. 2019 Jun 12;25(6):803-814.e5. doi: 10.1016/j.chom.2019.05.001. Epub 2019 Jun 4. Cell Host Microbe. 2019. PMID: 31175044 Free PMC article.

2

Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium.

Ziesack M, Gibson T, Oliver JKW, Shumaker AM, Hsu BB, Riglar DT, Giessen TW, DiBenedetto NV, Bry L, Way JC, Silver PA, Gerber GK. Ziesack M, et al. mSystems. 2019 Aug 13;4(4):e00352-19. doi: 10.1128/mSystems.00352-19. mSystems. 2019. PMID: 31409662 Free PMC article.

3

Gut metabolites predict Clostridioides difficile recurrence.

Dawkins JJ, Allegretti JR, Gibson TE, McClure E, Delaney M, Bry L, Gerber GK. Dawkins JJ, et al. Among authors: gibson te. Microbiome. 2022 Jun 9;10(1):87. doi: 10.1186/s40168-022-01284-1. Microbiome. 2022. PMID: 35681218 Free PMC article.

4

Strain tracking with uncertainty quantification.

Kim Y, Worby CJ, Acharya S, van Dijk LR, Alfonsetti D, Gromko Z, Azimzadeh P, Dodson K, Gerber G, Hultgren S, Earl AM, Berger B, Gibson TE. Kim Y, et al. Among authors: gibson te. bioRxiv [Preprint]. 2024 Jul 23:2023.01.25.525531. doi: 10.1101/2023.01.25.525531. bioRxiv. 2024. PMID: 36747646 Free PMC article. Preprint.

5

Spatiotemporal dynamics during niche remodeling by super-colonizing microbiota in the mammalian gut.

Urtecho G, Moody T, Huang Y, Sheth RU, Richardson M, Descamps HC, Kaufman A, Lekan O, Zhang Z, Velez-Cortes F, Qu Y, Cohen L, Ricaurte D, Gibson TE, Gerber GK, Thaiss CA, Wang HH. Urtecho G, et al. Among authors: gibson te. Cell Syst. 2024 Nov 20;15(11):1002-1017.e4. doi: 10.1016/j.cels.2024.10.007. Epub 2024 Nov 13. Cell Syst. 2024. PMID: 39541983

6

Inferring human microbial dynamics from temporal metagenomics data: Pitfalls and lessons.

Cao HT, Gibson TE, Bashan A, Liu YY. Cao HT, et al. Among authors: gibson te. Bioessays. 2017 Feb;39(2). doi: 10.1002/bies.201600188. Epub 2016 Dec 21. Bioessays. 2017. PMID: 28000336 Review.

7

Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks.

McGeachie MJ, Sordillo JE, Gibson T, Weinstock GM, Liu YY, Gold DR, Weiss ST, Litonjua A. McGeachie MJ, et al. Sci Rep. 2016 Feb 8;6:20359. doi: 10.1038/srep20359. Sci Rep. 2016. PMID: 26853461 Free PMC article.

8

Universality of human microbial dynamics.

Bashan A, Gibson TE, Friedman J, Carey VJ, Weiss ST, Hohmann EL, Liu YY. Bashan A, et al. Among authors: gibson te. Nature. 2016 Jun 9;534(7606):259-62. doi: 10.1038/nature18301. Nature. 2016. PMID: 27279224 Free PMC article.

9

On the Origins and Control of Community Types in the Human Microbiome.

Gibson TE, Bashan A, Cao HT, Weiss ST, Liu YY. Gibson TE, et al. PLoS Comput Biol. 2016 Feb 11;12(2):e1004688. doi: 10.1371/journal.pcbi.1004688. eCollection 2016 Feb. PLoS Comput Biol. 2016. PMID: 26866806 Free PMC article.

10

Ultra-Sensitive Serial Profiling of SARS-CoV-2 Antigens and Antibodies in Plasma to Understand Disease Progression in COVID-19 Patients with Severe Disease.

Ogata AF, Maley AM, Wu C, Gilboa T, Norman M, Lazarovits R, Mao CP, Newton G, Chang M, Nguyen K, Kamkaew M, Zhu Q, Gibson TE, Ryan ET, Charles RC, Marasco WA, Walt DR. Ogata AF, et al. Among authors: gibson te. Clin Chem. 2020 Dec 1;66(12):1562-1572. doi: 10.1093/clinchem/hvaa213. Clin Chem. 2020. PMID: 32897389 Free PMC article.

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