Xu J - Search Results

1

3.1 Å structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids.

Lahiri I, Xu J, Han BG, Oh J, Wang D, DiMaio F, Leschziner AE. Lahiri I, et al. Among authors: xu j. J Struct Biol. 2019 Sep 1;207(3):270-278. doi: 10.1016/j.jsb.2019.06.004. Epub 2019 Jun 11. J Struct Biol. 2019. PMID: 31200019 Free PMC article.

2

Structural and biochemical analysis of DNA lesion-induced RNA polymerase II arrest.

Oh J, Xu J, Chong J, Wang D. Oh J, et al. Among authors: xu j. Methods. 2019 Apr 15;159-160:29-34. doi: 10.1016/j.ymeth.2019.02.019. Epub 2019 Feb 22. Methods. 2019. PMID: 30797902 Free PMC article. Review.

3

Structural basis for the initiation of eukaryotic transcription-coupled DNA repair.

Xu J, Lahiri I, Wang W, Wier A, Cianfrocco MA, Chong J, Hare AA, Dervan PB, DiMaio F, Leschziner AE, Wang D. Xu J, et al. Nature. 2017 Nov 30;551(7682):653-657. doi: 10.1038/nature24658. Epub 2017 Nov 22. Nature. 2017. PMID: 29168508 Free PMC article.

4

Structural basis of DNA lesion recognition for eukaryotic transcription-coupled nucleotide excision repair.

Wang W, Xu J, Chong J, Wang D. Wang W, et al. Among authors: xu j. DNA Repair (Amst). 2018 Nov;71:43-55. doi: 10.1016/j.dnarep.2018.08.006. Epub 2018 Aug 23. DNA Repair (Amst). 2018. PMID: 30174298 Free PMC article. Review.

5

RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-π and CH-π interactions.

Oh J, Fleming AM, Xu J, Chong J, Burrows CJ, Wang D. Oh J, et al. Among authors: xu j. Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9338-9348. doi: 10.1073/pnas.1919904117. Epub 2020 Apr 13. Proc Natl Acad Sci U S A. 2020. PMID: 32284409 Free PMC article.

6

Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers.

Xu J, Wang W, Xu L, Chen JY, Chong J, Oh J, Leschziner AE, Fu XD, Wang D. Xu J, et al. Among authors: xu l. Proc Natl Acad Sci U S A. 2020 Oct 13;117(41):25486-25493. doi: 10.1073/pnas.2013379117. Epub 2020 Sep 28. Proc Natl Acad Sci U S A. 2020. PMID: 32989164 Free PMC article.

7

Molecular basis of transcriptional pausing, stalling, and transcription-coupled repair initiation.

Oh J, Xu J, Chong J, Wang D. Oh J, et al. Among authors: xu j. Biochim Biophys Acta Gene Regul Mech. 2021 Jan;1864(1):194659. doi: 10.1016/j.bbagrm.2020.194659. Epub 2020 Nov 30. Biochim Biophys Acta Gene Regul Mech. 2021. PMID: 33271312 Free PMC article. Review.

8

Opposite roles of transcription elongation factors Spt4/5 and Elf1 in RNA polymerase II transcription through B-form versus non-B DNA structures.

Xu J, Chong J, Wang D. Xu J, et al. Nucleic Acids Res. 2021 May 21;49(9):4944-4953. doi: 10.1093/nar/gkab240. Nucleic Acids Res. 2021. PMID: 33877330 Free PMC article.

9

Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair.

Yan C, Dodd T, Yu J, Leung B, Xu J, Oh J, Wang D, Ivanov I. Yan C, et al. Among authors: xu j. Nat Commun. 2021 Dec 1;12(1):7001. doi: 10.1038/s41467-021-27295-4. Nat Commun. 2021. PMID: 34853308 Free PMC article.

10

RNA polymerase II trapped on a molecular treadmill: Structural basis of persistent transcriptional arrest by a minor groove DNA binder.

Oh J, Jia T, Xu J, Chong J, Dervan PB, Wang D. Oh J, et al. Among authors: xu j. Proc Natl Acad Sci U S A. 2022 Jan 18;119(3):e2114065119. doi: 10.1073/pnas.2114065119. Proc Natl Acad Sci U S A. 2022. PMID: 35022237 Free PMC article.

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