Arganda-Carreras I - Search Results

1

Correction: Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians.

Gordon DG, Zelaya A, Arganda-Carreras I, Arganda S, Traniello JFA. Gordon DG, et al. PLoS One. 2019 Jun 24;14(6):e0219036. doi: 10.1371/journal.pone.0219036. eCollection 2019. PLoS One. 2019. PMID: 31233562 Free PMC article.

2

Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians.

Gordon DG, Zelaya A, Arganda-Carreras I, Arganda S, Traniello JFA. Gordon DG, et al. PLoS One. 2019 Mar 27;14(3):e0213618. doi: 10.1371/journal.pone.0213618. eCollection 2019. PLoS One. 2019. PMID: 30917163 Free PMC article.

3

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, Sebastian Seung H. Arganda-Carreras I, et al. Bioinformatics. 2017 Aug 1;33(15):2424-2426. doi: 10.1093/bioinformatics/btx180. Bioinformatics. 2017. PMID: 28369169

4

Fiji: an open-source platform for biological-image analysis.

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.

5

Crowdsourcing the creation of image segmentation algorithms for connectomics.

Arganda-Carreras I, Turaga SC, Berger DR, Cireşan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM, Liu T, Seyedhosseini M, Tasdizen T, Kamentsky L, Burget R, Uher V, Tan X, Sun C, Pham TD, Bas E, Uzunbas MG, Cardona A, Schindelin J, Seung HS. Arganda-Carreras I, et al. Front Neuroanat. 2015 Nov 5;9:142. doi: 10.3389/fnana.2015.00142. eCollection 2015. Front Neuroanat. 2015. PMID: 26594156 Free PMC article.

6

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ.

Legland D, Arganda-Carreras I, Andrey P. Legland D, et al. Bioinformatics. 2016 Nov 15;32(22):3532-3534. doi: 10.1093/bioinformatics/btw413. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412086

7

TrakEM2 software for neural circuit reconstruction.

Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ. Cardona A, et al. PLoS One. 2012;7(6):e38011. doi: 10.1371/journal.pone.0038011. Epub 2012 Jun 19. PLoS One. 2012. PMID: 22723842 Free PMC article.

8

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei.

Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C. Poulet A, et al. Bioinformatics. 2015 Apr 1;31(7):1144-6. doi: 10.1093/bioinformatics/btu774. Epub 2014 Nov 20. Bioinformatics. 2015. PMID: 25416749

9

Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach.

Arganda-Carreras I, Andrey P. Arganda-Carreras I, et al. Methods Mol Biol. 2017;1563:185-207. doi: 10.1007/978-1-4939-6810-7_13. Methods Mol Biol. 2017. PMID: 28324610

10

Avoiding a replication crisis in deep-learning-based bioimage analysis.

Laine RF, Arganda-Carreras I, Henriques R, Jacquemet G. Laine RF, et al. Nat Methods. 2021 Oct;18(10):1136-1144. doi: 10.1038/s41592-021-01284-3. Nat Methods. 2021. PMID: 34608322 Free PMC article.

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