Bossy R - Search Results

1

Improving the CONTES method for normalizing biomedical text entities with concepts from an ontology with (almost) no training data.

Ferré A, Ba M, Bossy R. Ferré A, et al. Among authors: bossy r. Genomics Inform. 2019 Jun;17(2):e20. doi: 10.5808/GI.2019.17.2.e20. Epub 2019 Jun 27. Genomics Inform. 2019. PMID: 31307135 Free PMC article.

2

WTO, an ontology for wheat traits and phenotypes in scientific publications.

Nédellec C, Ibanescu L, Bossy R, Sourdille P. Nédellec C, et al. Among authors: bossy r. Genomics Inform. 2020 Jun;18(2):e14. doi: 10.5808/GI.2020.18.2.e14. Epub 2020 Jun 16. Genomics Inform. 2020. PMID: 32634868 Free PMC article.

3

C-Norm: a neural approach to few-shot entity normalization.

Ferré A, Deléger L, Bossy R, Zweigenbaum P, Nédellec C. Ferré A, et al. Among authors: bossy r. BMC Bioinformatics. 2020 Dec 29;21(Suppl 23):579. doi: 10.1186/s12859-020-03886-8. BMC Bioinformatics. 2020. PMID: 33372606 Free PMC article.

4

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach.

Dérozier S, Bossy R, Deléger L, Ba M, Chaix E, Harlé O, Loux V, Falentin H, Nédellec C. Dérozier S, et al. Among authors: bossy r. PLoS One. 2023 Jan 20;18(1):e0272473. doi: 10.1371/journal.pone.0272473. eCollection 2023. PLoS One. 2023. PMID: 36662691 Free PMC article.

5

MilkOligoThesaurus, a dataset of mammalian milk oligosaccharide synonyms.

Rumeau M, Fenaille F, Girard A, Loux V, Ba M, Nédellec C, Deléger L, Bossy R, Aubin S, Knudsen C, Combes S. Rumeau M, et al. Among authors: bossy r. Data Brief. 2024 Apr 9;54:110404. doi: 10.1016/j.dib.2024.110404. eCollection 2024 Jun. Data Brief. 2024. PMID: 38665156 Free PMC article.

6

TaeC: A manually annotated text dataset for trait and phenotype extraction and entity linking in wheat breeding literature.

Nédellec C, Sauvion C, Bossy R, Borovikova M, Deléger L. Nédellec C, et al. Among authors: bossy r. PLoS One. 2024 Jun 13;19(6):e0305475. doi: 10.1371/journal.pone.0305475. eCollection 2024. PLoS One. 2024. PMID: 38870159 Free PMC article.

7

Text mining tools for extracting information about microbial biodiversity in food.

Chaix E, Deléger L, Bossy R, Nédellec C. Chaix E, et al. Among authors: bossy r. Food Microbiol. 2019 Aug;81:63-75. doi: 10.1016/j.fm.2018.04.011. Epub 2018 Apr 21. Food Microbiol. 2019. PMID: 30910089 Free PMC article.

8

Do syntactic trees enhance Bidirectional Encoder Representations from Transformers (BERT) models for chemical-drug relation extraction?

Tang A, Deléger L, Bossy R, Zweigenbaum P, Nédellec C. Tang A, et al. Among authors: bossy r. Database (Oxford). 2022 Aug 25;2022:baac070. doi: 10.1093/database/baac070. Database (Oxford). 2022. PMID: 36006843 Free PMC article.

9

BioNLP Shared Task--The Bacteria Track.

Bossy R, Jourde J, Manine AP, Veber P, Alphonse E, van de Guchte M, Bessières P, Nédellec C. Bossy R, et al. BMC Bioinformatics. 2012 Jun 26;13 Suppl 11(Suppl 11):S3. doi: 10.1186/1471-2105-13-S11-S3. BMC Bioinformatics. 2012. PMID: 22759457 Free PMC article.

10

Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task.

Bossy R, Golik W, Ratkovic Z, Valsamou D, Bessières P, Nédellec C. Bossy R, et al. BMC Bioinformatics. 2015;16 Suppl 10(Suppl 10):S1. doi: 10.1186/1471-2105-16-S10-S1. Epub 2015 Jul 13. BMC Bioinformatics. 2015. PMID: 26202448 Free PMC article.

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