Jermiin LS - Search Results

1

GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments.

Crotty SM, Minh BQ, Bean NG, Holland BR, Tuke J, Jermiin LS, Haeseler AV. Crotty SM, et al. Among authors: jermiin ls. Syst Biol. 2020 Mar 1;69(2):249-264. doi: 10.1093/sysbio/syz051. Syst Biol. 2020. PMID: 31364711

2

ModelFinder: fast model selection for accurate phylogenetic estimates.

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. Kalyaanamoorthy S, et al. Among authors: jermiin ls. Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8. Nat Methods. 2017. PMID: 28481363 Free PMC article.

3

A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics.

Jermiin LS, Catullo RA, Holland BR. Jermiin LS, et al. NAR Genom Bioinform. 2020 Jun 23;2(2):lqaa041. doi: 10.1093/nargab/lqaa041. eCollection 2020 Jun. NAR Genom Bioinform. 2020. PMID: 33575594 Free PMC article.

4

Tracing the decay of the historical signal in biological sequence data.

Ho SY, Jermiin L. Ho SY, et al. Syst Biol. 2004 Aug;53(4):623-37. doi: 10.1080/10635150490503035. Syst Biol. 2004. PMID: 15371250

5

Estimation of phylogeny and invariant sites under the general Markov model of nucleotide sequence evolution.

Jayaswal V, Robinson J, Jermiin L. Jayaswal V, et al. Syst Biol. 2007 Apr;56(2):155-62. doi: 10.1080/10635150701247921. Syst Biol. 2007. PMID: 17454972

6

Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages.

Jayaswal V, Wong TK, Robinson J, Poladian L, Jermiin LS. Jayaswal V, et al. Among authors: jermiin ls. Syst Biol. 2014 Sep;63(5):726-42. doi: 10.1093/sysbio/syu036. Epub 2014 Jun 12. Syst Biol. 2014. PMID: 24927722

7

A Likelihood-Ratio Test for Lumpability of Phylogenetic Data: Is the Markovian Property of an Evolutionary Process Retained in Recoded DNA?

Vera-Ruiz VA, Robinson J, Jermiin LS. Vera-Ruiz VA, et al. Among authors: jermiin ls. Syst Biol. 2022 Apr 19;71(3):660-675. doi: 10.1093/sysbio/syab074. Syst Biol. 2022. PMID: 34498090

8

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Improved consensus network techniques for genome-scale phylogeny.

Holland BR, Jermiin LS, Moulton V; SMBE Tri-National Young Investigators. Holland BR, et al. Among authors: jermiin ls. Mol Biol Evol. 2006 May;23(5):848-55. doi: 10.1093/molbev/msj061. Epub 2005 Nov 9. Mol Biol Evol. 2006. PMID: 16280536

9

Two stationary nonhomogeneous Markov models of nucleotide sequence evolution.

Jayaswal V, Jermiin LS, Poladian L, Robinson J. Jayaswal V, et al. Among authors: jermiin ls. Syst Biol. 2011 Jan;60(1):74-86. doi: 10.1093/sysbio/syq076. Epub 2010 Nov 16. Syst Biol. 2011. PMID: 21081482

10

Phylogenetic model evaluation.

Jermiin LS, Jayaswal V, Ababneh F, Robinson J. Jermiin LS, et al. Methods Mol Biol. 2008;452:331-64. doi: 10.1007/978-1-60327-159-2_16. Methods Mol Biol. 2008. PMID: 18566772 Review.

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