Ay F - Search Results

1

Identification of significant chromatin contacts from HiChIP data by FitHiChIP.

Bhattacharyya S, Chandra V, Vijayanand P, Ay F. Bhattacharyya S, et al. Among authors: ay f. Nat Commun. 2019 Sep 17;10(1):4221. doi: 10.1038/s41467-019-11950-y. Nat Commun. 2019. PMID: 31530818 Free PMC article.

2

nipalsMCIA: Flexible Multi-Block Dimensionality Reduction in R via Non-linear Iterative Partial Least Squares.

Mattessich M, Reyna J, Aron E, Ay F, Kilmer M, Kleinstein SH, Konstorum A. Mattessich M, et al. Among authors: ay f. bioRxiv [Preprint]. 2024 Jun 10:2024.06.07.597819. doi: 10.1101/2024.06.07.597819. bioRxiv. 2024. PMID: 38915554 Free PMC article. Preprint.

3

Brd2 is dispensable for genome compartmentalization and replication timing.

Hinojosa-Gonzalez L, Turner JL, Sasaki T, Ay F, Gilbert DM. Hinojosa-Gonzalez L, et al. Among authors: ay f. bioRxiv [Preprint]. 2023 Nov 19:2023.11.17.567572. doi: 10.1101/2023.11.17.567572. bioRxiv. 2023. PMID: 38249518 Free PMC article. Preprint.

4

Chromatin structure and var2csa - a tango in regulation of var gene expression in the human malaria parasite, Plasmodium falciparum?

Lenz T, Zhang X, Chakraborty A, Ardakany AR, Prudhomme J, Ay F, Deitsch K, Le Roch KG. Lenz T, et al. Among authors: ay f. bioRxiv [Preprint]. 2024 Feb 13:2024.02.13.580059. doi: 10.1101/2024.02.13.580059. bioRxiv. 2024. PMID: 38405848 Free PMC article. Preprint.

5

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells.

Schmiedel BJ, Seumois G, Samaniego-Castruita D, Cayford J, Schulten V, Chavez L, Ay F, Sette A, Peters B, Vijayanand P. Schmiedel BJ, et al. Among authors: ay f. Nat Commun. 2016 Nov 16;7:13426. doi: 10.1038/ncomms13426. Nat Commun. 2016. PMID: 27848966 Free PMC article.

6

Reduced expression of phosphatase PTPN2 promotes pathogenic conversion of Tregs in autoimmunity.

Svensson MN, Doody KM, Schmiedel BJ, Bhattacharyya S, Panwar B, Wiede F, Yang S, Santelli E, Wu DJ, Sacchetti C, Gujar R, Seumois G, Kiosses WB, Aubry I, Kim G, Mydel P, Sakaguchi S, Kronenberg M, Tiganis T, Tremblay ML, Ay F, Vijayanand P, Bottini N. Svensson MN, et al. Among authors: ay f. J Clin Invest. 2019 Mar 1;129(3):1193-1210. doi: 10.1172/JCI123267. Epub 2019 Feb 11. J Clin Invest. 2019. PMID: 30620725 Free PMC article.

7

Human Eosinophils Express a Distinct Gene Expression Program in Response to IL-3 Compared with Common β-Chain Cytokines IL-5 and GM-CSF.

Nelson RK, Brickner H, Panwar B, Ramírez-Suástegui C, Herrera-de la Mata S, Liu N, Diaz D, Alexander LEC, Ay F, Vijayanand P, Seumois G, Akuthota P. Nelson RK, et al. Among authors: ay f. J Immunol. 2019 Jul 15;203(2):329-337. doi: 10.4049/jimmunol.1801668. Epub 2019 Jun 7. J Immunol. 2019. PMID: 31175163 Free PMC article.

8

Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer.

Clarke J, Panwar B, Madrigal A, Singh D, Gujar R, Wood O, Chee SJ, Eschweiler S, King EV, Awad AS, Hanley CJ, McCann KJ, Bhattacharyya S, Woo E, Alzetani A, Seumois G, Thomas GJ, Ganesan AP, Friedmann PS, Sanchez-Elsner T, Ay F, Ottensmeier CH, Vijayanand P. Clarke J, et al. Among authors: ay f. J Exp Med. 2019 Sep 2;216(9):2128-2149. doi: 10.1084/jem.20190249. Epub 2019 Jun 21. J Exp Med. 2019. PMID: 31227543 Free PMC article.

9

Selfish: discovery of differential chromatin interactions via a self-similarity measure.

Ardakany AR, Ay F, Lonardi S. Ardakany AR, et al. Among authors: ay f. Bioinformatics. 2019 Jul 15;35(14):i145-i153. doi: 10.1093/bioinformatics/btz362. Bioinformatics. 2019. PMID: 31510653 Free PMC article.

10

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains.

Lhoumaud P, Badri S, Rodriguez-Hernaez J, Sakellaropoulos T, Sethia G, Kloetgen A, Cornwell M, Bhattacharyya S, Ay F, Bonneau R, Tsirigos A, Skok JA. Lhoumaud P, et al. Among authors: ay f. Nat Commun. 2019 Oct 24;10(1):4843. doi: 10.1038/s41467-019-12811-4. Nat Commun. 2019. PMID: 31649247 Free PMC article.

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