Livny J - Search Results

1

Spatiotemporal Organization of the E. coli Transcriptome: Translation Independence and Engagement in Regulation.

Kannaiah S, Livny J, Amster-Choder O. Kannaiah S, et al. Among authors: livny j. Mol Cell. 2019 Nov 21;76(4):574-589.e7. doi: 10.1016/j.molcel.2019.08.013. Epub 2019 Sep 17. Mol Cell. 2019. PMID: 31540875 Free article.

2

Perturbation-Specific Transcriptional Mapping for unbiased target elucidation of antibiotics.

Romano KP, Bagnall J, Warrier T, Sullivan J, Ferrara K, Orzechowski M, Nguyen P, Raines K, Livny J, Shoresh N, Hung D. Romano KP, et al. Among authors: livny j. bioRxiv [Preprint]. 2024 Jun 7:2024.04.25.590978. doi: 10.1101/2024.04.25.590978. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2409747121. doi: 10.1073/pnas.2409747121. PMID: 38712067 Free PMC article. Updated. Preprint.

3

RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression.

Mandlik A, Livny J, Robins WP, Ritchie JM, Mekalanos JJ, Waldor MK. Mandlik A, et al. Among authors: livny j. Cell Host Microbe. 2011 Aug 18;10(2):165-74. doi: 10.1016/j.chom.2011.07.007. Cell Host Microbe. 2011. PMID: 21843873 Free PMC article.

4

Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis.

Betin V, Penaranda C, Bandyopadhyay N, Yang R, Abitua A, Bhattacharyya RP, Fan A, Avraham R, Livny J, Shoresh N, Hung DT. Betin V, et al. Among authors: livny j. Sci Rep. 2019 Dec 17;9(1):19244. doi: 10.1038/s41598-019-55633-6. Sci Rep. 2019. PMID: 31848386 Free PMC article.

5

Wisdom of the crowds: A suggested polygenic plan for small-RNA-mediated regulation in bacteria.

Goldberger O, Livny J, Bhattacharyya R, Amster-Choder O. Goldberger O, et al. Among authors: livny j. iScience. 2021 Sep 10;24(10):103096. doi: 10.1016/j.isci.2021.103096. eCollection 2021 Oct 22. iScience. 2021. PMID: 34622151 Free PMC article.

6

NanoRNAs prime transcription initiation in vivo.

Goldman SR, Sharp JS, Vvedenskaya IO, Livny J, Dove SL, Nickels BE. Goldman SR, et al. Among authors: livny j. Mol Cell. 2011 Jun 24;42(6):817-25. doi: 10.1016/j.molcel.2011.06.005. Mol Cell. 2011. PMID: 21700226 Free PMC article.

7

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.

Giannoukos G, Ciulla DM, Huang K, Haas BJ, Izard J, Levin JZ, Livny J, Earl AM, Gevers D, Ward DV, Nusbaum C, Birren BW, Gnirke A. Giannoukos G, et al. Among authors: livny j. Genome Biol. 2012;13(3):R23. doi: 10.1186/gb-2012-13-3-r23. Genome Biol. 2012. PMID: 22455878 Free PMC article.

8

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

Haas BJ, Chin M, Nusbaum C, Birren BW, Livny J. Haas BJ, et al. Among authors: livny j. BMC Genomics. 2012 Dec 27;13:734. doi: 10.1186/1471-2164-13-734. BMC Genomics. 2012. PMID: 23270466 Free PMC article.

9

High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data.

Chao MC, Pritchard JR, Zhang YJ, Rubin EJ, Livny J, Davis BM, Waldor MK. Chao MC, et al. Among authors: livny j. Nucleic Acids Res. 2013 Oct;41(19):9033-48. doi: 10.1093/nar/gkt654. Epub 2013 Jul 30. Nucleic Acids Res. 2013. PMID: 23901011 Free PMC article.

10

TargetRNA2: identifying targets of small regulatory RNAs in bacteria.

Kery MB, Feldman M, Livny J, Tjaden B. Kery MB, et al. Among authors: livny j. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W124-9. doi: 10.1093/nar/gku317. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753424 Free PMC article.

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