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Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome.
Song B, Song Y, Fu Y, Kizito EB, Kamenya SN, Kabod PN, Liu H, Muthemba S, Kariba R, Njuguna J, Maina S, Stomeo F, Djikeng A, Hendre PS, Chen X, Chen W, Li X, Sun W, Wang S, Cheng S, Muchugi A, Jamnadass R, Shapiro HY, Van Deynze A, Yang H, Wang J, Xu X, Odeny DA, Liu X. Song B, et al. Among authors: chen w, chen x. Gigascience. 2019 Oct 1;8(10):giz115. doi: 10.1093/gigascience/giz115. Gigascience. 2019. PMID: 31574156 Free PMC article.
The Sinocyclocheilus cavefish genome provides insights into cave adaptation.
Yang J, Chen X, Bai J, Fang D, Qiu Y, Jiang W, Yuan H, Bian C, Lu J, He S, Pan X, Zhang Y, Wang X, You X, Wang Y, Sun Y, Mao D, Liu Y, Fan G, Zhang H, Chen X, Zhang X, Zheng L, Wang J, Cheng L, Chen J, Ruan Z, Li J, Yu H, Peng C, Ma X, Xu J, He Y, Xu Z, Xu P, Wang J, Yang H, Wang J, Whitten T, Xu X, Shi Q. Yang J, et al. Among authors: chen j, chen x. BMC Biol. 2016 Jan 4;14:1. doi: 10.1186/s12915-015-0223-4. BMC Biol. 2016. PMID: 26728391 Free PMC article.
Genome-wide Target Enrichment-aided Chip Design: a 66 K SNP Chip for Cashmere Goat.
Qiao X, Su R, Wang Y, Wang R, Yang T, Li X, Chen W, He S, Jiang Y, Xu Q, Wan W, Zhang Y, Zhang W, Chen J, Liu B, Liu X, Fan Y, Chen D, Jiang H, Fang D, Liu Z, Wang X, Zhang Y, Mao D, Wang Z, Di R, Zhao Q, Zhong T, Yang H, Wang J, Wang W, Dong Y, Chen X, Xu X, Li J. Qiao X, et al. Among authors: chen j, chen d, chen w, chen x. Sci Rep. 2017 Aug 17;7(1):8621. doi: 10.1038/s41598-017-09285-z. Sci Rep. 2017. PMID: 28819310 Free PMC article.
Population genomic data reveal genes related to important traits of quail.
Wu Y, Zhang Y, Hou Z, Fan G, Pi J, Sun S, Chen J, Liu H, Du X, Shen J, Hu G, Chen W, Pan A, Yin P, Chen X, Pu Y, Zhang H, Liang Z, Jian J, Zhang H, Wu B, Sun J, Chen J, Tao H, Yang T, Xiao H, Yang H, Zheng C, Bai M, Fang X, Burt DW, Wang W, Li Q, Xu X, Li C, Yang H, Wang J, Yang N, Liu X, Du J. Wu Y, et al. Among authors: chen j, chen w, chen x. Gigascience. 2018 May 1;7(5):giy049. doi: 10.1093/gigascience/giy049. Gigascience. 2018. PMID: 29762663 Free PMC article.
Molecular digitization of a botanical garden: high-depth whole-genome sequencing of 689 vascular plant species from the Ruili Botanical Garden.
Liu H, Wei J, Yang T, Mu W, Song B, Yang T, Fu Y, Wang X, Hu G, Li W, Zhou H, Chang Y, Chen X, Chen H, Cheng L, He X, Cai H, Cai X, Wang M, Li Y, Sahu SK, Yang J, Wang Y, Mu R, Liu J, Zhao J, Huang Z, Xu X, Liu X. Liu H, et al. Among authors: chen x, chen h. Gigascience. 2019 Apr 1;8(4):giz007. doi: 10.1093/gigascience/giz007. Gigascience. 2019. PMID: 30689836 Free PMC article.
Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions.
Chen X, Fang D, Wu C, Liu B, Liu Y, Sahu SK, Song B, Yang S, Yang T, Wei J, Wang X, Zhang W, Xu Q, Wang H, Yuan L, Liao X, Chen L, Chen Z, Yuan F, Chang Y, Lu L, Yang H, Wang J, Xu X, Liu X, Wicke S, Liu H. Chen X, et al. Among authors: chen z, chen l. Genome Biol Evol. 2020 Jan 1;12(1):3663-3676. doi: 10.1093/gbe/evz271. Genome Biol Evol. 2020. PMID: 31845987 Free PMC article.
Genomes shed light on the evolution of Begonia, a mega-diverse genus.
Li L, Chen X, Fang D, Dong S, Guo X, Li N, Campos-Dominguez L, Wang W, Liu Y, Lang X, Peng Y, Tian D, Thomas DC, Mu W, Liu M, Wu C, Yang T, Zhang S, Yang L, Yang J, Liu ZJ, Zhang L, Zhang X, Chen F, Jiao Y, Guo Y, Hughes M, Wang W, Liu X, Zhong C, Li A, Sahu SK, Yang H, Wu E, Sharbrough J, Lisby M, Liu X, Xu X, Soltis DE, Van de Peer Y, Kidner C, Zhang S, Liu H. Li L, et al. Among authors: chen f, chen x. New Phytol. 2022 Apr;234(1):295-310. doi: 10.1111/nph.17949. Epub 2022 Feb 9. New Phytol. 2022. PMID: 34997964 Free PMC article.
Balanophora genomes display massively convergent evolution with other extreme holoparasites and provide novel insights into parasite-host interactions.
Chen X, Fang D, Xu Y, Duan K, Yoshida S, Yang S, Sahu SK, Fu H, Guang X, Liu M, Wu C, Liu Y, Mu W, Chen Y, Fan Y, Wang F, Peng S, Shi D, Wang Y, Yu R, Zhang W, Bai Y, Liu ZJ, Yan Q, Liu X, Xu X, Yang H, Wu J, Graham SW, Liu H. Chen X, et al. Among authors: chen y. Nat Plants. 2023 Oct;9(10):1627-1642. doi: 10.1038/s41477-023-01517-7. Epub 2023 Sep 21. Nat Plants. 2023. PMID: 37735254
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