Read DF - Search Results

1

Stable integrant-specific differences in bimodal HIV-1 expression patterns revealed by high-throughput analysis.

Read DF, Atindaana E, Pyaram K, Yang F, Emery S, Cheong A, Nakama KR, Burnett C, Larragoite ET, Battivelli E, Verdin E, Planelles V, Chang CH, Telesnitsky A, Kidd JM. Read DF, et al. PLoS Pathog. 2019 Oct 4;15(10):e1007903. doi: 10.1371/journal.ppat.1007903. eCollection 2019 Oct. PLoS Pathog. 2019. PMID: 31584995 Free PMC article.

2

Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

Read DF, Cook K, Lu YY, Le Roch KG, Noble WS. Read DF, et al. PLoS Comput Biol. 2019 Sep 11;15(9):e1007329. doi: 10.1371/journal.pcbi.1007329. eCollection 2019 Sep. PLoS Comput Biol. 2019. PMID: 31509524 Free PMC article.

3

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J. Cusanovich DA, et al. Among authors: read df. Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2. Cell. 2018. PMID: 30078704 Free PMC article.

4

Airway epithelial interferon response to SARS-CoV-2 is inferior to rhinovirus and heterologous rhinovirus infection suppresses SARS-CoV-2 replication.

Vanderwall ER, Barrow KA, Rich LM, Read DF, Trapnell C, Okoloko O, Ziegler SF, Hallstrand TS, White MP, Debley JS. Vanderwall ER, et al. Among authors: read df. Sci Rep. 2022 Apr 28;12(1):6972. doi: 10.1038/s41598-022-10763-2. Sci Rep. 2022. PMID: 35484173 Free PMC article.

5

An In Vitro Assay to Detect tRNA-Isopentenyl Transferase Activity.

Chambers AE, Richardson AE, Read DF, Waller TJ, Bernstein DA, Smaldino PJ. Chambers AE, et al. Among authors: read df. J Vis Exp. 2018 Oct 8;(140):58100. doi: 10.3791/58100. J Vis Exp. 2018. PMID: 30346392 Free PMC article.

6

The human tRNA-modifying protein, TRIT1, forms amyloid fibers in vitro.

Waller TJ, Read DF, Engelke DR, Smaldino PJ. Waller TJ, et al. Among authors: read df. Gene. 2017 May 15;612:19-24. doi: 10.1016/j.gene.2016.10.041. Epub 2016 Oct 29. Gene. 2017. PMID: 27984194

7

Aggregation of Mod5 is affected by tRNA binding with implications for tRNA gene-mediated silencing.

Read DF, Waller TJ, Tse E, Southworth DR, Engelke DR, Smaldino PJ. Read DF, et al. FEBS Lett. 2017 Jun;591(11):1601-1610. doi: 10.1002/1873-3468.12627. Epub 2017 May 22. FEBS Lett. 2017. PMID: 28303570 Free PMC article.

8

The cytoplasmic and nuclear populations of the eukaryote tRNA-isopentenyl transferase have distinct functions with implications in human cancer.

Smaldino PJ, Read DF, Pratt-Hyatt M, Hopper AK, Engelke DR. Smaldino PJ, et al. Among authors: read df. Gene. 2015 Feb 1;556(1):13-8. doi: 10.1016/j.gene.2014.09.049. Epub 2014 Sep 26. Gene. 2015. PMID: 25261850 Free PMC article. Review.

9

Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart.

Read DF, Booth GT, Daza RM, Jackson DL, Gladden RG, Srivatsan SR, Ewing B, Franks JM, Spurrell CH, Gomes AR, O'Day D, Gogate AA, Martin BK, Larson H, Pfleger C, Starita L, Lin Y, Shendure J, Lin S, Trapnell C. Read DF, et al. Commun Biol. 2024 Aug 26;7(1):1052. doi: 10.1038/s42003-024-06582-y. Commun Biol. 2024. PMID: 39187646 Free PMC article.

10

Pulmonary osteoclast-like cells in silica induced pulmonary fibrosis.

Hasegawa Y, Franks JM, Tanaka Y, Uehara Y, Read DF, Williams C, Srivatsan S, Pitstick LB, Nikolaidis NM, Shaver CM, Kropski J, Ware LB, Taylor CJ, Banovich NE, Wu H, Gardner JC, Osterburg AR, Yu JJ, Kopras EJ, Teitelbaum SL, Wikenheiser-Brokamp KA, Trapnell C, McCormack FX. Hasegawa Y, et al. Among authors: read df. Sci Adv. 2024 Jul 12;10(28):eadl4913. doi: 10.1126/sciadv.adl4913. Epub 2024 Jul 10. Sci Adv. 2024. PMID: 38985878 Free PMC article.

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