Niroula A - Search Results

1

ProTstab - predictor for cellular protein stability.

Yang Y, Ding X, Zhu G, Niroula A, Lv Q, Vihinen M. Yang Y, et al. Among authors: niroula a. BMC Genomics. 2019 Nov 4;20(1):804. doi: 10.1186/s12864-019-6138-7. BMC Genomics. 2019. PMID: 31684883 Free PMC article.

2

Harmful somatic amino acid substitutions affect key pathways in cancers.

Niroula A, Vihinen M. Niroula A, et al. BMC Med Genomics. 2015 Aug 19;8:53. doi: 10.1186/s12920-015-0125-x. BMC Med Genomics. 2015. PMID: 26282678 Free PMC article.

3

PON-Sol: prediction of effects of amino acid substitutions on protein solubility.

Yang Y, Niroula A, Shen B, Vihinen M. Yang Y, et al. Among authors: niroula a. Bioinformatics. 2016 Jul 1;32(13):2032-4. doi: 10.1093/bioinformatics/btw066. Epub 2016 Feb 19. Bioinformatics. 2016. PMID: 27153720

4

PON-tstab: Protein Variant Stability Predictor. Importance of Training Data Quality.

Yang Y, Urolagin S, Niroula A, Ding X, Shen B, Vihinen M. Yang Y, et al. Among authors: niroula a. Int J Mol Sci. 2018 Mar 28;19(4):1009. doi: 10.3390/ijms19041009. Int J Mol Sci. 2018. PMID: 29597263 Free PMC article.

5

PON-P2: prediction method for fast and reliable identification of harmful variants.

Niroula A, Urolagin S, Vihinen M. Niroula A, et al. PLoS One. 2015 Feb 3;10(2):e0117380. doi: 10.1371/journal.pone.0117380. eCollection 2015. PLoS One. 2015. PMID: 25647319 Free PMC article.

6

Classification of Amino Acid Substitutions in Mismatch Repair Proteins Using PON-MMR2.

Niroula A, Vihinen M. Niroula A, et al. Hum Mutat. 2015 Dec;36(12):1128-34. doi: 10.1002/humu.22900. Epub 2015 Sep 22. Hum Mutat. 2015. PMID: 26333163

7

PON-mt-tRNA: a multifactorial probability-based method for classification of mitochondrial tRNA variations.

Niroula A, Vihinen M. Niroula A, et al. Nucleic Acids Res. 2016 Mar 18;44(5):2020-7. doi: 10.1093/nar/gkw046. Epub 2016 Feb 3. Nucleic Acids Res. 2016. PMID: 26843426 Free PMC article.

8

Variation Interpretation Predictors: Principles, Types, Performance, and Choice.

Niroula A, Vihinen M. Niroula A, et al. Hum Mutat. 2016 Jun;37(6):579-97. doi: 10.1002/humu.22987. Epub 2016 Apr 15. Hum Mutat. 2016. PMID: 26987456 Review.

9

Predicting Severity of Disease-Causing Variants.

Niroula A, Vihinen M. Niroula A, et al. Hum Mutat. 2017 Apr;38(4):357-364. doi: 10.1002/humu.23173. Epub 2017 Jan 24. Hum Mutat. 2017. PMID: 28070986

10

PON-P and PON-P2 predictor performance in CAGI challenges: Lessons learned.

Niroula A, Vihinen M. Niroula A, et al. Hum Mutat. 2017 Sep;38(9):1085-1091. doi: 10.1002/humu.23199. Epub 2017 May 2. Hum Mutat. 2017. PMID: 28224672 Free PMC article.

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