Alinejad-Rokny H - Search Results

1

CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes.

Bayati M, Rabiee HR, Mehrbod M, Vafaee F, Ebrahimi D, Forrest ARR, Alinejad-Rokny H. Bayati M, et al. Sci Rep. 2020 Jan 28;10(1):1286. doi: 10.1038/s41598-020-58107-2. Sci Rep. 2020. PMID: 31992766 Free PMC article.

2

Insights into the motif preference of APOBEC3 enzymes.

Ebrahimi D, Alinejad-Rokny H, Davenport MP. Ebrahimi D, et al. PLoS One. 2014 Jan 31;9(1):e87679. doi: 10.1371/journal.pone.0087679. eCollection 2014. PLoS One. 2014. PMID: 24498164 Free PMC article.

3

Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection.

Gooneratne SL, Alinejad-Rokny H, Ebrahimi D, Bohn PS, Wiseman RW, O'Connor DH, Davenport MP, Kent SJ. Gooneratne SL, et al. J Virol. 2014 Dec;88(24):14310-25. doi: 10.1128/JVI.02428-14. Epub 2014 Oct 1. J Virol. 2014. PMID: 25275134 Free PMC article.

4

A method to avoid errors associated with the analysis of hypermutated viral sequences by alignment-based methods.

Alinejad-Rokny H, Ebrahimi D. Alinejad-Rokny H, et al. J Biomed Inform. 2015 Dec;58:220-225. doi: 10.1016/j.jbi.2015.10.008. Epub 2015 Oct 19. J Biomed Inform. 2015. PMID: 26494601 Free article.

5

Source of CpG Depletion in the HIV-1 Genome.

Alinejad-Rokny H, Anwar F, Waters SA, Davenport MP, Ebrahimi D. Alinejad-Rokny H, et al. Mol Biol Evol. 2016 Dec;33(12):3205-3212. doi: 10.1093/molbev/msw205. Epub 2016 Sep 28. Mol Biol Evol. 2016. PMID: 27682824

6

A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis.

Vafaee F, Diakos C, Kirschner MB, Reid G, Michael MZ, Horvath LG, Alinejad-Rokny H, Cheng ZJ, Kuncic Z, Clarke S. Vafaee F, et al. NPJ Syst Biol Appl. 2018 Jun 1;4:20. doi: 10.1038/s41540-018-0056-1. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29872543 Free PMC article.

7

Brain-Enriched Coding and Long Non-coding RNA Genes Are Overrepresented in Recurrent Neurodevelopmental Disorder CNVs.

Alinejad-Rokny H, Heng JIT, Forrest ARR. Alinejad-Rokny H, et al. Cell Rep. 2020 Oct 27;33(4):108307. doi: 10.1016/j.celrep.2020.108307. Cell Rep. 2020. PMID: 33113368 Free article.

8

VIRMOTIF: A User-Friendly Tool for Viral Sequence Analysis.

Rajaei P, Jahanian KH, Beheshti A, Band SS, Dehzangi A, Alinejad-Rokny H. Rajaei P, et al. Genes (Basel). 2021 Jan 27;12(2):186. doi: 10.3390/genes12020186. Genes (Basel). 2021. PMID: 33514039 Free PMC article.

9

A systematic review of long non-coding RNAs with a potential role in breast cancer.

Heidari R, Akbariqomi M, Asgari Y, Ebrahimi D, Alinejad-Rokny H. Heidari R, et al. Mutat Res Rev Mutat Res. 2021 Jan-Jun;787:108375. doi: 10.1016/j.mrrev.2021.108375. Epub 2021 Apr 16. Mutat Res Rev Mutat Res. 2021. PMID: 34083033 Review.

10

Whole-Genome Analysis of De Novo Somatic Point Mutations Reveals Novel Mutational Biomarkers in Pancreatic Cancer.

Ghareyazi A, Mohseni A, Dashti H, Beheshti A, Dehzangi A, Rabiee HR, Alinejad-Rokny H. Ghareyazi A, et al. Cancers (Basel). 2021 Aug 30;13(17):4376. doi: 10.3390/cancers13174376. Cancers (Basel). 2021. PMID: 34503185 Free PMC article.

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