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Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
Lee ER, Parkin N, Jennings C, Brumme CJ, Enns E, Casadellà M, Howison M, Coetzer M, Avila-Rios S, Capina R, Marinier E, Van Domselaar G, Noguera-Julian M, Kirkby D, Knaggs J, Harrigan R, Quiñones-Mateu M, Paredes R, Kantor R, Sandstrom P, Ji H. Lee ER, et al. Among authors: howison m. Sci Rep. 2020 Jan 31;10(1):1634. doi: 10.1038/s41598-020-58544-z. Sci Rep. 2020. PMID: 32005884 Free PMC article.
Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.
Ji H, Enns E, Brumme CJ, Parkin N, Howison M, Lee ER, Capina R, Marinier E, Avila-Rios S, Sandstrom P, Van Domselaar G, Harrigan R, Paredes R, Kantor R, Noguera-Julian M. Ji H, et al. Among authors: howison m. J Int AIDS Soc. 2018 Oct;21(10):e25193. doi: 10.1002/jia2.25193. J Int AIDS Soc. 2018. PMID: 30350345 Free PMC article.
Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping.
Parkin NT, Avila-Rios S, Bibby DF, Brumme CJ, Eshleman SH, Harrigan PR, Howison M, Hunt G, Ji H, Kantor R, Ledwaba J, Lee ER, Matías-Florentino M, Mbisa JL, Noguera-Julian M, Paredes R, Rivera-Amill V, Swanstrom R, Zaccaro DJ, Zhang Y, Zhou S, Jennings C. Parkin NT, et al. Among authors: howison m. Viruses. 2020 Jun 27;12(7):694. doi: 10.3390/v12070694. Viruses. 2020. PMID: 32605062 Free PMC article.
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters.
Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Novitsky V, et al. Among authors: howison m. Sci Rep. 2020 Oct 29;10(1):18547. doi: 10.1038/s41598-020-75560-1. Sci Rep. 2020. PMID: 33122765 Free PMC article.
Longitudinal typing of molecular HIV clusters in a statewide epidemic.
Novitsky V, Steingrimsson J, Howison M, Dunn C, Gillani FS, Manne A, Li Y, Spence M, Parillo Z, Fulton J, Marak T, Chan P, Bertrand T, Bandy U, Alexander-Scott N, Hogan J, Kantor R. Novitsky V, et al. Among authors: howison m. AIDS. 2021 Sep 1;35(11):1711-1722. doi: 10.1097/QAD.0000000000002953. AIDS. 2021. PMID: 34033589 Free PMC article.
SARS-CoV-2 Variants in Rhode Island.
Kantor R, Novitsky V, Carpenter-Azevedo K, Howison M, Manne A, Darpolor JK, Bobenchik A, Tripathi A, Huard RC, King E. Kantor R, et al. Among authors: howison m. R I Med J (2013). 2021 Sep 1;104(7):16-20. R I Med J (2013). 2021. PMID: 34279520 Free article.
Challenges in evaluating the use of viral sequence data to identify HIV transmission networks for public health.
Kantor R, Fulton JP, Steingrimsson J, Novitsky V, Howison M, Gillani F, Li Y, Manne A, Parillo Z, Spence M, Marak T, Chan P, Dunn CW, Bertrand T, Bandy U, Alexander-Scott N, Hogan JW. Kantor R, et al. Among authors: howison m. Stat Commun Infect Dis. 2020 Sep;12(Suppl 1):20190019. doi: 10.1515/scid-2019-0019. Epub 2020 Nov 11. Stat Commun Infect Dis. 2020. PMID: 34733405 Free PMC article.
Statewide Longitudinal Trends in Transmitted HIV-1 Drug Resistance in Rhode Island, USA.
Novitsky V, Steingrimsson J, Gillani FS, Howison M, Aung S, Solomon M, Won CY, Brotherton A, Shah R, Dunn C, Fulton J, Bertrand T, Civitarese A, Howe K, Marak T, Chan P, Bandy U, Alexander-Scott N, Hogan J, Kantor R. Novitsky V, et al. Among authors: howison m. Open Forum Infect Dis. 2021 Dec 7;9(1):ofab587. doi: 10.1093/ofid/ofab587. eCollection 2022 Jan. Open Forum Infect Dis. 2021. PMID: 34988256 Free PMC article.
36 results