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Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
Lee ER, Parkin N, Jennings C, Brumme CJ, Enns E, Casadellà M, Howison M, Coetzer M, Avila-Rios S, Capina R, Marinier E, Van Domselaar G, Noguera-Julian M, Kirkby D, Knaggs J, Harrigan R, Quiñones-Mateu M, Paredes R, Kantor R, Sandstrom P, Ji H. Lee ER, et al. Among authors: marinier e. Sci Rep. 2020 Jan 31;10(1):1634. doi: 10.1038/s41598-020-58544-z. Sci Rep. 2020. PMID: 32005884 Free PMC article.
Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.
Ji H, Enns E, Brumme CJ, Parkin N, Howison M, Lee ER, Capina R, Marinier E, Avila-Rios S, Sandstrom P, Van Domselaar G, Harrigan R, Paredes R, Kantor R, Noguera-Julian M. Ji H, et al. Among authors: marinier e. J Int AIDS Soc. 2018 Oct;21(10):e25193. doi: 10.1002/jia2.25193. J Int AIDS Soc. 2018. PMID: 30350345 Free PMC article.
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G. Marinier E, et al. Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702. Nucleic Acids Res. 2017. PMID: 29048594 Free PMC article.
Proksee: in-depth characterization and visualization of bacterial genomes.
Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen CY, Graham M, Van Domselaar G, Stothard P. Grant JR, et al. Among authors: marinier e. Nucleic Acids Res. 2023 Jul 5;51(W1):W484-W492. doi: 10.1093/nar/gkad326. Nucleic Acids Res. 2023. PMID: 37140037 Free PMC article.
40 results