Long Q - Search Results

1

Evaluation of A Phylogenetic Pipeline to Examine Transmission Networks in A Canadian HIV Cohort.

Mak L, Perera D, Lang R, Kossinna P, He J, Gill MJ, Long Q, van Marle G. Mak L, et al. Among authors: long q. Microorganisms. 2020 Jan 31;8(2):196. doi: 10.3390/microorganisms8020196. Microorganisms. 2020. PMID: 32023939 Free PMC article.

2

SimPEL: Simulation-based power estimation for sequencing studies of low-prevalence conditions.

Mak L, Li M, Cao C, Gordon P, Tarailo-Graovac M, Bousman C, Wang P, Long Q. Mak L, et al. Among authors: long q. Genet Epidemiol. 2018 Jul;42(5):480-487. doi: 10.1002/gepi.22129. Epub 2018 May 22. Genet Epidemiol. 2018. PMID: 29790190

3

PRESM: personalized reference editor for somatic mutation discovery in cancer genomics.

Cao C, Mak L, Jin G, Gordon P, Ye K, Long Q. Cao C, et al. Among authors: long q. Bioinformatics. 2019 May 1;35(9):1445-1452. doi: 10.1093/bioinformatics/bty812. Bioinformatics. 2019. PMID: 30247633

4

kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes.

Cao C, Kwok D, Edie S, Li Q, Ding B, Kossinna P, Campbell S, Wu J, Greenberg M, Long Q. Cao C, et al. Among authors: long q. Brief Bioinform. 2021 Jul 20;22(4):bbaa270. doi: 10.1093/bib/bbaa270. Brief Bioinform. 2021. PMID: 33200776

5

Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding.

Cao C, He J, Mak L, Perera D, Kwok D, Wang J, Li M, Mourier T, Gavriliuc S, Greenberg M, Morrissy AS, Sycuro LK, Yang G, Jeffares DC, Long Q. Cao C, et al. Among authors: long q. Mol Biol Evol. 2021 May 19;38(6):2660-2672. doi: 10.1093/molbev/msab037. Mol Biol Evol. 2021. PMID: 33547786 Free PMC article.

6

Disentangling genetic feature selection and aggregation in transcriptome-wide association studies.

Cao C, Kossinna P, Kwok D, Li Q, He J, Su L, Guo X, Zhang Q, Long Q. Cao C, et al. Among authors: long q. Genetics. 2022 Feb 4;220(2):iyab216. doi: 10.1093/genetics/iyab216. Genetics. 2022. PMID: 34849857 Free PMC article.

7

Reconstructing SARS-CoV-2 infection dynamics through the phylogenetic inference of unsampled sources of infection.

Perera D, Perks B, Potemkin M, Liu A, Gordon PMK, Gill MJ, Long Q, van Marle G. Perera D, et al. Among authors: long q. PLoS One. 2021 Dec 15;16(12):e0261422. doi: 10.1371/journal.pone.0261422. eCollection 2021. PLoS One. 2021. PMID: 34910769 Free PMC article.

8

Integrating transcription factor occupancy with transcriptome-wide association analysis identifies susceptibility genes in human cancers.

He J, Wen W, Beeghly A, Chen Z, Cao C, Shu XO, Zheng W, Long Q, Guo X. He J, et al. Among authors: long q. Nat Commun. 2022 Nov 19;13(1):7118. doi: 10.1038/s41467-022-34888-0. Nat Commun. 2022. PMID: 36402776 Free PMC article.

9

An expression-directed linear mixed model discovering low-effect genetic variants.

Li Q, Bian J, Qian Y, Kossinna P, Gau C, Gordon PMK, Zhou X, Guo X, Yan J, Wu J, Long Q. Li Q, et al. Among authors: long q. Genetics. 2024 Apr 3;226(4):iyae018. doi: 10.1093/genetics/iyae018. Genetics. 2024. PMID: 38314848

10

WgLink: reconstructing whole-genome viral haplotypes using L0+L1-regularization.

Cao C, Greenberg M, Long Q. Cao C, et al. Among authors: long q. Bioinformatics. 2021 Sep 9;37(17):2744-2746. doi: 10.1093/bioinformatics/btab076. Bioinformatics. 2021. PMID: 33532820

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