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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL.
Wutz G, Ladurner R, St Hilaire BG, Stocsits RR, Nagasaka K, Pignard B, Sanborn A, Tang W, Várnai C, Ivanov MP, Schoenfelder S, van der Lelij P, Huang X, Dürnberger G, Roitinger E, Mechtler K, Davidson IF, Fraser P, Lieberman-Aiden E, Peters JM. Wutz G, et al. Among authors: schoenfelder s. Elife. 2020 Feb 17;9:e52091. doi: 10.7554/eLife.52091. Elife. 2020. PMID: 32065581 Free PMC article.
The transcriptional interactome: gene expression in 3D.
Schoenfelder S, Clay I, Fraser P. Schoenfelder S, et al. Curr Opin Genet Dev. 2010 Apr;20(2):127-33. doi: 10.1016/j.gde.2010.02.002. Epub 2010 Mar 6. Curr Opin Genet Dev. 2010. PMID: 20211559 Review.
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.
Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P. Nagano T, et al. Among authors: schoenfelder s. Nature. 2013 Oct 3;502(7469):59-64. doi: 10.1038/nature12593. Epub 2013 Sep 25. Nature. 2013. PMID: 24067610 Free PMC article.
Integrated genome-scale analysis of the transcriptional regulatory landscape in a blood stem/progenitor cell model.
Wilson NK, Schoenfelder S, Hannah R, Sánchez Castillo M, Schütte J, Ladopoulos V, Mitchelmore J, Goode DK, Calero-Nieto FJ, Moignard V, Wilkinson AC, Jimenez-Madrid I, Kinston S, Spivakov M, Fraser P, Göttgens B. Wilson NK, et al. Among authors: schoenfelder s. Blood. 2016 Mar 31;127(13):e12-23. doi: 10.1182/blood-2015-10-677393. Epub 2016 Jan 25. Blood. 2016. PMID: 26809507 Free article.
HiCUP: pipeline for mapping and processing Hi-C data.
Wingett S, Ewels P, Furlan-Magaril M, Nagano T, Schoenfelder S, Fraser P, Andrews S. Wingett S, et al. Among authors: schoenfelder s. F1000Res. 2015 Nov 20;4:1310. doi: 10.12688/f1000research.7334.1. eCollection 2015. F1000Res. 2015. PMID: 26835000 Free PMC article.
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.
Cairns J, Freire-Pritchett P, Wingett SW, Várnai C, Dimond A, Plagnol V, Zerbino D, Schoenfelder S, Javierre BM, Osborne C, Fraser P, Spivakov M. Cairns J, et al. Among authors: schoenfelder s. Genome Biol. 2016 Jun 15;17(1):127. doi: 10.1186/s13059-016-0992-2. Genome Biol. 2016. PMID: 27306882 Free PMC article.
62 results