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Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle.
Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, Lee J, Pang AWC, Heaton MP, Phillippy AM, Hiendleder S, Smith TPL, Williams JL. Low WY, et al. Among authors: hiendleder s. Nat Commun. 2020 Apr 29;11(1):2071. doi: 10.1038/s41467-020-15848-y. Nat Commun. 2020. PMID: 32350247 Free PMC article.
De novo assembly of haplotype-resolved genomes with trio binning.
Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM. Koren S, et al. Among authors: hiendleder s. Nat Biotechnol. 2018 Oct 22:10.1038/nbt.4277. doi: 10.1038/nbt.4277. Online ahead of print. Nat Biotechnol. 2018. PMID: 30346939 Free PMC article.
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, Eichler EE, Williams JL, Smith TPL, Jarvis ED, Sullivan ST, Kingan SB. Kronenberg ZN, et al. Among authors: hiendleder s. Nat Commun. 2021 Apr 28;12(1):1935. doi: 10.1038/s41467-020-20536-y. Nat Commun. 2021. PMID: 33911078 Free PMC article.
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.
Low WY, Rosen BD, Ren Y, Bickhart DM, To TH, Martin FJ, Billis K, Sonstegard TS, Sullivan ST, Hiendleder S, Williams JL, Heaton MP, Smith TPL. Low WY, et al. Among authors: hiendleder s. BMC Genomics. 2022 May 4;23(1):344. doi: 10.1186/s12864-022-08561-1. BMC Genomics. 2022. PMID: 35508966 Free PMC article.
SNPs for parentage testing and traceability in globally diverse breeds of sheep.
Heaton MP, Leymaster KA, Kalbfleisch TS, Kijas JW, Clarke SM, McEwan J, Maddox JF, Basnayake V, Petrik DT, Simpson B, Smith TP, Chitko-McKown CG; International Sheep Genomics Consortium. Heaton MP, et al. PLoS One. 2014 Apr 16;9(4):e94851. doi: 10.1371/journal.pone.0094851. eCollection 2014. PLoS One. 2014. PMID: 24740156 Free PMC article.
Maternal and paternal genomes differentially affect myofibre characteristics and muscle weights of bovine fetuses at midgestation.
Xiang R, Ghanipoor-Samami M, Johns WH, Eindorf T, Rutley DL, Kruk ZA, Fitzsimmons CJ, Thomsen DA, Roberts CT, Burns BM, Anderson GI, Greenwood PL, Hiendleder S. Xiang R, et al. Among authors: hiendleder s. PLoS One. 2013;8(1):e53402. doi: 10.1371/journal.pone.0053402. Epub 2013 Jan 14. PLoS One. 2013. PMID: 23341941 Free PMC article.
88 results