Banga JR - Search Results

1

A dual-parameter identification approach for data-based predictive modeling of hybrid gene regulatory network-growth kinetics in Pseudomonas putida mt-2.

Tsipa A, Pitt JA, Banga JR, Mantalaris A. Tsipa A, et al. Among authors: banga jr. Bioprocess Biosyst Eng. 2020 Sep;43(9):1671-1688. doi: 10.1007/s00449-020-02360-2. Epub 2020 May 6. Bioprocess Biosyst Eng. 2020. PMID: 32377941

2

Parameter estimation in models of biological oscillators: an automated regularised estimation approach.

Pitt JA, Banga JR. Pitt JA, et al. Among authors: banga jr. BMC Bioinformatics. 2019 Feb 15;20(1):82. doi: 10.1186/s12859-019-2630-y. BMC Bioinformatics. 2019. PMID: 30770736 Free PMC article.

3

A hybrid approach for efficient and robust parameter estimation in biochemical pathways.

Rodriguez-Fernandez M, Mendes P, Banga JR. Rodriguez-Fernandez M, et al. Among authors: banga jr. Biosystems. 2006 Feb-Mar;83(2-3):248-65. doi: 10.1016/j.biosystems.2005.06.016. Epub 2005 Oct 19. Biosystems. 2006. PMID: 16236429

4

Hybrid optimization method with general switching strategy for parameter estimation.

Balsa-Canto E, Peifer M, Banga JR, Timmer J, Fleck C. Balsa-Canto E, et al. Among authors: banga jr. BMC Syst Biol. 2008 Mar 24;2:26. doi: 10.1186/1752-0509-2-26. BMC Syst Biol. 2008. PMID: 18366722 Free PMC article.

5

Parameter estimation and optimal experimental design.

Banga JR, Balsa-Canto E. Banga JR, et al. Essays Biochem. 2008;45:195-209. doi: 10.1042/BSE0450195. Essays Biochem. 2008. PMID: 18793133 Review.

6

An iterative identification procedure for dynamic modeling of biochemical networks.

Balsa-Canto E, Alonso AA, Banga JR. Balsa-Canto E, et al. Among authors: banga jr. BMC Syst Biol. 2010 Feb 17;4:11. doi: 10.1186/1752-0509-4-11. BMC Syst Biol. 2010. PMID: 20163703 Free PMC article.

7

Inference of complex biological networks: distinguishability issues and optimization-based solutions.

Szederkényi G, Banga JR, Alonso AA. Szederkényi G, et al. Among authors: banga jr. BMC Syst Biol. 2011 Oct 28;5:177. doi: 10.1186/1752-0509-5-177. BMC Syst Biol. 2011. PMID: 22034917 Free PMC article.

8

Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach.

Henriques D, Rocha M, Saez-Rodriguez J, Banga JR. Henriques D, et al. Among authors: banga jr. Bioinformatics. 2015 Sep 15;31(18):2999-3007. doi: 10.1093/bioinformatics/btv314. Epub 2015 May 21. Bioinformatics. 2015. PMID: 26002881 Free PMC article.

9

Enabling network inference methods to handle missing data and outliers.

Folch-Fortuny A, Villaverde AF, Ferrer A, Banga JR. Folch-Fortuny A, et al. Among authors: banga jr. BMC Bioinformatics. 2015 Sep 3;16:283. doi: 10.1186/s12859-015-0717-7. BMC Bioinformatics. 2015. PMID: 26335628 Free PMC article.

10

Robust and efficient parameter estimation in dynamic models of biological systems.

Gábor A, Banga JR. Gábor A, et al. Among authors: banga jr. BMC Syst Biol. 2015 Oct 29;9:74. doi: 10.1186/s12918-015-0219-2. BMC Syst Biol. 2015. PMID: 26515482 Free PMC article.

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