Yang R - Search Results

1

RAS internal tandem duplication disrupts GTPase-activating protein (GAP) binding to activate oncogenic signaling.

Nelson AC, Turbyville TJ, Dharmaiah S, Rigby M, Yang R, Wang TY, Columbus J, Stephens R, Taylor T, Sciacca D, Onsongo G, Sarver A, Subramanian S, Nissley DV, Simanshu DK, Lou E. Nelson AC, et al. Among authors: yang r. J Biol Chem. 2020 Jul 10;295(28):9335-9348. doi: 10.1074/jbc.RA119.011080. Epub 2020 May 11. J Biol Chem. 2020. PMID: 32393580 Free PMC article.

2

ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly.

Yang R, Nelson AC, Henzler C, Thyagarajan B, Silverstein KA. Yang R, et al. Genome Med. 2015 Dec 7;7:127. doi: 10.1186/s13073-015-0251-2. Genome Med. 2015. PMID: 26643039 Free PMC article.

3

Optimization of a microfluidics-based next generation sequencing assay for clinical oncology diagnostics.

Henzler C, Schomaker M, Yang R, Lambert AP, LaRue R, Kincaid R, Beckman K, Kemmer T, Wilson J, Yohe S, Thyagarajan B, Nelson AC. Henzler C, et al. Among authors: yang r. Ann Transl Med. 2018 May;6(9):162. doi: 10.21037/atm.2018.05.07. Ann Transl Med. 2018. PMID: 29911110 Free PMC article.

4

ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.

Wang TY, Wang L, Alam SK, Hoeppner LH, Yang R. Wang TY, et al. Among authors: yang r. Bioinformatics. 2019 Oct 15;35(20):4159-4161. doi: 10.1093/bioinformatics/btz193. Bioinformatics. 2019. PMID: 30887025

5

ScanITD: Detecting internal tandem duplication with robust variant allele frequency estimation.

Wang TY, Yang R. Wang TY, et al. Among authors: yang r. Gigascience. 2020 Aug 1;9(8):giaa089. doi: 10.1093/gigascience/giaa089. Gigascience. 2020. PMID: 32852038 Free PMC article.

6

A pan-cancer transcriptome analysis of exitron splicing identifies novel cancer driver genes and neoepitopes.

Wang TY, Liu Q, Ren Y, Alam SK, Wang L, Zhu Z, Hoeppner LH, Dehm SM, Cao Q, Yang R. Wang TY, et al. Among authors: yang r. Mol Cell. 2021 May 20;81(10):2246-2260.e12. doi: 10.1016/j.molcel.2021.03.028. Epub 2021 Apr 15. Mol Cell. 2021. PMID: 33861991 Free PMC article.

7

LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data.

Ren Y, Wang TY, Anderton LC, Cao Q, Yang R. Ren Y, et al. Among authors: yang r. BMC Genomics. 2021 Jul 27;22(1):574. doi: 10.1186/s12864-021-07900-y. BMC Genomics. 2021. PMID: 34315441 Free PMC article.

8

Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo.

Wang TY, Yang R. Wang TY, et al. Among authors: yang r. STAR Protoc. 2021 Sep 3;2(3):100788. doi: 10.1016/j.xpro.2021.100788. eCollection 2021 Sep 17. STAR Protoc. 2021. PMID: 34522901 Free PMC article.

9

Detecting Medium and Large Insertions and Deletions with transIndel.

Wang TY, Yang R. Wang TY, et al. Among authors: yang r. Methods Mol Biol. 2022;2493:67-75. doi: 10.1007/978-1-0716-2293-3_5. Methods Mol Biol. 2022. PMID: 35751809

10

ASCL1-regulated DARPP-32 and t-DARPP stimulate small cell lung cancer growth and neuroendocrine tumour cell proliferation.

Alam SK, Wang L, Ren Y, Hernandez CE, Kosari F, Roden AC, Yang R, Hoeppner LH. Alam SK, et al. Among authors: yang r. Br J Cancer. 2020 Sep;123(5):819-832. doi: 10.1038/s41416-020-0923-6. Epub 2020 Jun 5. Br J Cancer. 2020. PMID: 32499571 Free PMC article.

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