Zhang Y - Search Results

1

Significant association between host transcriptome-derived HPV oncogene E6* influence score and carcinogenic pathways, tumor size, and survival in head and neck cancer.

Qin T, Koneva LA, Liu Y, Zhang Y, Arthur AE, Zarins KR, Carey TE, Chepeha D, Wolf GT, Rozek LS, Sartor MA. Qin T, et al. Among authors: zhang y. Head Neck. 2020 Sep;42(9):2375-2389. doi: 10.1002/hed.26244. Epub 2020 May 14. Head Neck. 2020. PMID: 32406560 Free PMC article.

2

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.

Zhang Y, Lin YH, Johnson TD, Rozek LS, Sartor MA. Zhang Y, et al. Bioinformatics. 2014 Sep 15;30(18):2568-75. doi: 10.1093/bioinformatics/btu372. Epub 2014 Jun 3. Bioinformatics. 2014. PMID: 24894502 Free PMC article.

3

Genomic binding and regulation of gene expression by the thyroid carcinoma-associated PAX8-PPARG fusion protein.

Zhang Y, Yu J, Lee C, Xu B, Sartor MA, Koenig RJ. Zhang Y, et al. Oncotarget. 2015 Dec 1;6(38):40418-32. doi: 10.18632/oncotarget.6340. Oncotarget. 2015. PMID: 26595524 Free PMC article.

4

Subtypes of HPV-Positive Head and Neck Cancers Are Associated with HPV Characteristics, Copy Number Alterations, PIK3CA Mutation, and Pathway Signatures.

Zhang Y, Koneva LA, Virani S, Arthur AE, Virani A, Hall PB, Warden CD, Carey TE, Chepeha DB, Prince ME, McHugh JB, Wolf GT, Rozek LS, Sartor MA. Zhang Y, et al. Clin Cancer Res. 2016 Sep 15;22(18):4735-45. doi: 10.1158/1078-0432.CCR-16-0323. Epub 2016 Apr 18. Clin Cancer Res. 2016. PMID: 27091409 Free PMC article.

5

Adipogenic Differentiation of Thyroid Cancer Cells Through the Pax8-PPARγ Fusion Protein Is Regulated by Thyroid Transcription Factor 1 (TTF-1).

Xu B, O'Donnell M, O'Donnell J, Yu J, Zhang Y, Sartor MA, Koenig RJ. Xu B, et al. Among authors: zhang y. J Biol Chem. 2016 Sep 9;291(37):19274-86. doi: 10.1074/jbc.M116.740324. Epub 2016 Jul 19. J Biol Chem. 2016. PMID: 27435678 Free PMC article.

6

Genomic binding of PAX8-PPARG fusion protein regulates cancer-related pathways and alters the immune landscape of thyroid cancer.

Zhang Y, Yu J, Grachtchouk V, Qin T, Lumeng CN, Sartor MA, Koenig RJ. Zhang Y, et al. Oncotarget. 2017 Jan 24;8(4):5761-5773. doi: 10.18632/oncotarget.14050. Oncotarget. 2017. PMID: 28008156 Free PMC article.

7

HPV Integration in HNSCC Correlates with Survival Outcomes, Immune Response Signatures, and Candidate Drivers.

Koneva LA, Zhang Y, Virani S, Hall PB, McHugh JB, Chepeha DB, Wolf GT, Carey TE, Rozek LS, Sartor MA. Koneva LA, et al. Among authors: zhang y. Mol Cancer Res. 2018 Jan;16(1):90-102. doi: 10.1158/1541-7786.MCR-17-0153. Epub 2017 Sep 19. Mol Cancer Res. 2018. PMID: 28928286 Free PMC article.

8

Expressed HNSCC variants by HPV-status in a well-characterized Michigan cohort.

Qin T, Zhang Y, Zarins KR, Jones TR, Virani S, Peterson LA, McHugh JB, Chepeha D, Wolf GT, Rozek LS, Sartor MA. Qin T, et al. Among authors: zhang y. Sci Rep. 2018 Jul 30;8(1):11458. doi: 10.1038/s41598-018-29599-w. Sci Rep. 2018. PMID: 30061624 Free PMC article.

9

Cardiac cell type-specific gene regulatory programs and disease risk association.

Hocker JD, Poirion OB, Zhu F, Buchanan J, Zhang K, Chiou J, Wang TM, Zhang Q, Hou X, Li YE, Zhang Y, Farah EN, Wang A, McCulloch AD, Gaulton KJ, Ren B, Chi NC, Preissl S. Hocker JD, et al. Among authors: zhang q, zhang k, zhang y. Sci Adv. 2021 May 14;7(20):eabf1444. doi: 10.1126/sciadv.abf1444. Print 2021 May. Sci Adv. 2021. PMID: 33990324 Free PMC article.

10

Joint profiling of histone modifications and transcriptome in single cells from mouse brain.

Zhu C, Zhang Y, Li YE, Lucero J, Behrens MM, Ren B. Zhu C, et al. Among authors: zhang y. Nat Methods. 2021 Mar;18(3):283-292. doi: 10.1038/s41592-021-01060-3. Epub 2021 Feb 15. Nat Methods. 2021. PMID: 33589836 Free PMC article.

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