Fang L - Search Results

1

Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases.

Zhao M, Havrilla JM, Fang L, Chen Y, Peng J, Liu C, Wu C, Sarmady M, Botas P, Isla J, Lyon GJ, Weng C, Wang K. Zhao M, et al. Among authors: fang l. NAR Genom Bioinform. 2020 Jun;2(2):lqaa032. doi: 10.1093/nargab/lqaa032. Epub 2020 May 25. NAR Genom Bioinform. 2020. PMID: 32500119 Free PMC article.

2

NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.

Fang L, Hu J, Wang D, Wang K. Fang L, et al. BMC Bioinformatics. 2018 May 23;19(1):180. doi: 10.1186/s12859-018-2207-1. BMC Bioinformatics. 2018. PMID: 29792160 Free PMC article.

3

Identification of Copy Number Variants from SNP Arrays Using PennCNV.

Fang L, Wang K. Fang L, et al. Methods Mol Biol. 2018;1833:1-28. doi: 10.1007/978-1-4939-8666-8_1. Methods Mol Biol. 2018. PMID: 30039360

4

Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data.

Liu Q, Fang L, Yu G, Wang D, Xiao CL, Wang K. Liu Q, et al. Among authors: fang l. Nat Commun. 2019 Jun 4;10(1):2449. doi: 10.1038/s41467-019-10168-2. Nat Commun. 2019. PMID: 31164644 Free PMC article.

5

Single-molecule optical mapping enables quantitative measurement of D4Z4 repeats in facioscapulohumeral muscular dystrophy (FSHD).

Dai Y, Li P, Wang Z, Liang F, Yang F, Fang L, Huang Y, Huang S, Zhou J, Wang D, Cui L, Wang K. Dai Y, et al. Among authors: fang l. J Med Genet. 2020 Feb;57(2):109-120. doi: 10.1136/jmedgenet-2019-106078. Epub 2019 Sep 10. J Med Genet. 2020. PMID: 31506324 Free PMC article.

6

LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.

Fang L, Kao C, Gonzalez MV, Mafra FA, Pellegrino da Silva R, Li M, Wenzel SS, Wimmer K, Hakonarson H, Wang K. Fang L, et al. Nat Commun. 2019 Dec 6;10(1):5585. doi: 10.1038/s41467-019-13397-7. Nat Commun. 2019. PMID: 31811119 Free PMC article.

7

Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes.

Hu Y, Fang L, Nicholson C, Wang K. Hu Y, et al. Among authors: fang l. iScience. 2020 Jun 26;23(6):101223. doi: 10.1016/j.isci.2020.101223. Epub 2020 Jun 2. iScience. 2020. PMID: 32563152 Free PMC article.

8

LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing.

Liu Q, Hu Y, Stucky A, Fang L, Zhong JF, Wang K. Liu Q, et al. Among authors: fang l. BMC Genomics. 2020 Dec 29;21(Suppl 11):793. doi: 10.1186/s12864-020-07207-4. BMC Genomics. 2020. PMID: 33372596 Free PMC article.

9

LIQA: long-read isoform quantification and analysis.

Hu Y, Fang L, Chen X, Zhong JF, Li M, Wang K. Hu Y, et al. Among authors: fang l. Genome Biol. 2021 Jun 17;22(1):182. doi: 10.1186/s13059-021-02399-8. Genome Biol. 2021. PMID: 34140043 Free PMC article.

10

NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks.

Ahsan MU, Liu Q, Fang L, Wang K. Ahsan MU, et al. Among authors: fang l. Genome Biol. 2021 Sep 6;22(1):261. doi: 10.1186/s13059-021-02472-2. Genome Biol. 2021. PMID: 34488830 Free PMC article.

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