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Page 1
Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia.
Manning JE, Bohl JA, Lay S, Chea S, Sovann L, Sengdoeurn Y, Heng S, Vuthy C, Kalantar K, Ahyong V, Tan M, Sheu J, Tato CM, DeRisi JL, Baril L, Duong V, Dussart P, Karlsson EA. Manning JE, et al. Among authors: kalantar k. bioRxiv [Preprint]. 2020 Mar 5:2020.03.02.968818. doi: 10.1101/2020.03.02.968818. bioRxiv. 2020. PMID: 32511296 Free PMC article. Preprint.
Extracorporeal life support survival in a pediatric hematopoietic cellular transplant recipient with presumed GvHD-related fulminant myocarditis.
Zinter MS, Barrows BD, Ursell PC, Kowalek K, Kalantar K, Cambronero N, DeRisi JL, Oishi P, Dvorak CC. Zinter MS, et al. Among authors: kalantar k. Bone Marrow Transplant. 2017 Sep;52(9):1330-1333. doi: 10.1038/bmt.2017.114. Epub 2017 Jun 5. Bone Marrow Transplant. 2017. PMID: 28581474 Free PMC article. No abstract available.
Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients.
Langelier C, Zinter MS, Kalantar K, Yanik GA, Christenson S, O'Donovan B, White C, Wilson M, Sapru A, Dvorak CC, Miller S, Chiu CY, DeRisi JL. Langelier C, et al. Among authors: kalantar k. Am J Respir Crit Care Med. 2018 Feb 15;197(4):524-528. doi: 10.1164/rccm.201706-1097LE. Am J Respir Crit Care Med. 2018. PMID: 28686513 Free PMC article. No abstract available.
Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children.
Zinter MS, Dvorak CC, Mayday MY, Iwanaga K, Ly NP, McGarry ME, Church GD, Faricy LE, Rowan CM, Hume JR, Steiner ME, Crawford ED, Langelier C, Kalantar K, Chow ED, Miller S, Shimano K, Melton A, Yanik GA, Sapru A, DeRisi JL. Zinter MS, et al. Among authors: kalantar k. Clin Infect Dis. 2019 May 17;68(11):1847-1855. doi: 10.1093/cid/ciy802. Clin Infect Dis. 2019. PMID: 30239621 Free PMC article.
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults.
Langelier C, Kalantar KL, Moazed F, Wilson MR, Crawford ED, Deiss T, Belzer A, Bolourchi S, Caldera S, Fung M, Jauregui A, Malcolm K, Lyden A, Khan L, Vessel K, Quan J, Zinter M, Chiu CY, Chow ED, Wilson J, Miller S, Matthay MA, Pollard KS, Christenson S, Calfee CS, DeRisi JL. Langelier C, et al. Among authors: kalantar kl. Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12353-E12362. doi: 10.1073/pnas.1809700115. Epub 2018 Nov 27. Proc Natl Acad Sci U S A. 2018. PMID: 30482864 Free PMC article.
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota.
Kalantar KL, Moazed F, Christenson SC, Wilson J, Deiss T, Belzer A, Vessel K, Caldera S, Jauregui A, Bolourchi S, DeRisi JL, Calfee CS, Langelier C. Kalantar KL, et al. Am J Physiol Lung Cell Mol Physiol. 2019 Mar 1;316(3):L578-L584. doi: 10.1152/ajplung.00476.2018. Epub 2019 Jan 17. Am J Physiol Lung Cell Mol Physiol. 2019. PMID: 30652494 Free PMC article.
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda.
Ramesh A, Nakielny S, Hsu J, Kyohere M, Byaruhanga O, de Bourcy C, Egger R, Dimitrov B, Juan YF, Sheu J, Wang J, Kalantar K, Langelier C, Ruel T, Mpimbaza A, Wilson MR, Rosenthal PJ, DeRisi JL. Ramesh A, et al. Among authors: kalantar k. PLoS One. 2019 Jun 20;14(6):e0218318. doi: 10.1371/journal.pone.0218318. eCollection 2019. PLoS One. 2019. PMID: 31220115 Free PMC article.
Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens.
Saha S, Ramesh A, Kalantar K, Malaker R, Hasanuzzaman M, Khan LM, Mayday MY, Sajib MSI, Li LM, Langelier C, Rahman H, Crawford ED, Tato CM, Islam M, Juan YF, de Bourcy C, Dimitrov B, Wang J, Tang J, Sheu J, Egger R, De Carvalho TR, Wilson MR, Saha SK, DeRisi JL. Saha S, et al. Among authors: kalantar k. mBio. 2019 Dec 17;10(6):e02877-19. doi: 10.1128/mBio.02877-19. mBio. 2019. PMID: 31848287 Free PMC article.
IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
Kalantar KL, Carvalho T, de Bourcy CFA, Dimitrov B, Dingle G, Egger R, Han J, Holmes OB, Juan YF, King R, Kislyuk A, Lin MF, Mariano M, Morse T, Reynoso LV, Cruz DR, Sheu J, Tang J, Wang J, Zhang MA, Zhong E, Ahyong V, Lay S, Chea S, Bohl JA, Manning JE, Tato CM, DeRisi JL. Kalantar KL, et al. Gigascience. 2020 Oct 15;9(10):giaa111. doi: 10.1093/gigascience/giaa111. Gigascience. 2020. PMID: 33057676 Free PMC article.
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system.
Bohl JA, Lay S, Chea S, Ahyong V, Parker DM, Gallagher S, Fintzi J, Man S, Ponce A, Sreng S, Kong D, Oliveira F, Kalantar K, Tan M, Fahsbender L, Sheu J, Neff N, Detweiler AM, Yek C, Ly S, Sath R, Huch C, Kry H, Leang R, Huy R, Lon C, Tato CM, DeRisi JL, Manning JE. Bohl JA, et al. Among authors: kalantar k. Proc Natl Acad Sci U S A. 2022 Mar 15;119(11):e2115285119. doi: 10.1073/pnas.2115285119. Epub 2022 Mar 1. Proc Natl Acad Sci U S A. 2022. PMID: 35238677 Free PMC article.
91 results