Thiele I - Search Results

1

Parkinson's disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions.

Baldini F, Hertel J, Sandt E, Thinnes CC, Neuberger-Castillo L, Pavelka L, Betsou F, Krüger R, Thiele I; NCER-PD Consortium. Baldini F, et al. Among authors: thiele i. BMC Biol. 2020 Jun 9;18(1):62. doi: 10.1186/s12915-020-00775-7. BMC Biol. 2020. PMID: 32517799 Free PMC article.

2

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.

Thiele I, Jamshidi N, Fleming RM, Palsson BØ. Thiele I, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000312. doi: 10.1371/journal.pcbi.1000312. Epub 2009 Mar 13. PLoS Comput Biol. 2009. PMID: 19282977 Free PMC article.

3

Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism.

Fleming RM, Thiele I, Provan G, Nasheuer HP. Fleming RM, et al. Among authors: thiele i. J Theor Biol. 2010 Jun 7;264(3):683-92. doi: 10.1016/j.jtbi.2010.02.044. Epub 2010 Mar 15. J Theor Biol. 2010. PMID: 20230840 Free PMC article.

4

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models.

Fleming RM, Thiele I. Fleming RM, et al. Among authors: thiele i. Bioinformatics. 2011 Jan 1;27(1):142-3. doi: 10.1093/bioinformatics/btq607. Epub 2010 Nov 28. Bioinformatics. 2011. PMID: 21115436 Free PMC article.

5

A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm.

Sigurdsson G, Fleming RM, Heinken A, Thiele I. Sigurdsson G, et al. Among authors: thiele i. PLoS One. 2012;7(4):e34337. doi: 10.1371/journal.pone.0034337. Epub 2012 Apr 16. PLoS One. 2012. PMID: 22523548 Free PMC article.

6

Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction.

Haraldsdóttir HS, Thiele I, Fleming RM. Haraldsdóttir HS, et al. Among authors: thiele i. Biophys J. 2012 Apr 18;102(8):1703-11. doi: 10.1016/j.bpj.2012.02.032. Biophys J. 2012. PMID: 22768925 Free PMC article.

7

Mass conserved elementary kinetics is sufficient for the existence of a non-equilibrium steady state concentration.

Fleming RM, Thiele I. Fleming RM, et al. Among authors: thiele i. J Theor Biol. 2012 Dec 7;314:173-81. doi: 10.1016/j.jtbi.2012.08.021. Epub 2012 Aug 28. J Theor Biol. 2012. PMID: 22947275

8

Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut.

Heinken A, Sahoo S, Fleming RM, Thiele I. Heinken A, et al. Among authors: thiele i. Gut Microbes. 2013 Jan-Feb;4(1):28-40. doi: 10.4161/gmic.22370. Epub 2012 Sep 28. Gut Microbes. 2013. PMID: 23022739 Free PMC article.

9

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.

Thiele I, Fleming RM, Que R, Bordbar A, Diep D, Palsson BO. Thiele I, et al. PLoS One. 2012;7(9):e45635. doi: 10.1371/journal.pone.0045635. Epub 2012 Sep 28. PLoS One. 2012. PMID: 23029152 Free PMC article.

10

A systems biology approach to studying the role of microbes in human health.

Thiele I, Heinken A, Fleming RM. Thiele I, et al. Curr Opin Biotechnol. 2013 Feb;24(1):4-12. doi: 10.1016/j.copbio.2012.10.001. Epub 2012 Oct 25. Curr Opin Biotechnol. 2013. PMID: 23102866 Free article. Review.

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