Skinnider MA - Search Results

1

Dynamic rewiring of the human interactome by interferon signaling.

Kerr CH, Skinnider MA, Andrews DDT, Madero AM, Chan QWT, Stacey RG, Stoynov N, Jan E, Foster LJ. Kerr CH, et al. Among authors: skinnider ma. Genome Biol. 2020 Jun 15;21(1):140. doi: 10.1186/s13059-020-02050-y. Genome Biol. 2020. PMID: 32539747 Free PMC article.

2

A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury.

Streijger F, Skinnider MA, Rogalski JC, Balshaw R, Shannon CP, Prudova A, Belanger L, Ritchie L, Tsang A, Christie S, Parent S, Mac-Thiong JM, Bailey C, Urquhart J, Ailon T, Paquette S, Boyd M, Street J, Fisher CG, Dvorak MF, Borchers CH, Foster LJ, Kwon BK. Streijger F, et al. Among authors: skinnider ma. J Neurotrauma. 2017 Jun 15;34(12):2054-2068. doi: 10.1089/neu.2016.4879. Epub 2017 Apr 7. J Neurotrauma. 2017. PMID: 28276985

3

A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).

Stacey RG, Skinnider MA, Scott NE, Foster LJ. Stacey RG, et al. Among authors: skinnider ma. BMC Bioinformatics. 2017 Oct 23;18(1):457. doi: 10.1186/s12859-017-1865-8. BMC Bioinformatics. 2017. PMID: 29061110 Free PMC article.

4

Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury.

Squair JW, Tigchelaar S, Moon KM, Liu J, Tetzlaff W, Kwon BK, Krassioukov AV, West CR, Foster LJ, Skinnider MA. Squair JW, et al. Among authors: skinnider ma. Elife. 2018 Oct 2;7:e39188. doi: 10.7554/eLife.39188. Elife. 2018. PMID: 30277459 Free PMC article.

5

Genomic data integration systematically biases interactome mapping.

Skinnider MA, Stacey RG, Foster LJ. Skinnider MA, et al. PLoS Comput Biol. 2018 Oct 17;14(10):e1006474. doi: 10.1371/journal.pcbi.1006474. eCollection 2018 Oct. PLoS Comput Biol. 2018. PMID: 30332399 Free PMC article.

6

Context-specific interactions in literature-curated protein interaction databases.

Stacey RG, Skinnider MA, Chik JHL, Foster LJ. Stacey RG, et al. Among authors: skinnider ma. BMC Genomics. 2018 Oct 19;19(1):758. doi: 10.1186/s12864-018-5139-2. BMC Genomics. 2018. PMID: 30340458 Free PMC article.

7

Evaluating measures of association for single-cell transcriptomics.

Skinnider MA, Squair JW, Foster LJ. Skinnider MA, et al. Nat Methods. 2019 May;16(5):381-386. doi: 10.1038/s41592-019-0372-4. Epub 2019 Apr 8. Nat Methods. 2019. PMID: 30962620

8

Cell type prioritization in single-cell data.

Skinnider MA, Squair JW, Kathe C, Anderson MA, Gautier M, Matson KJE, Milano M, Hutson TH, Barraud Q, Phillips AA, Foster LJ, La Manno G, Levine AJ, Courtine G. Skinnider MA, et al. Nat Biotechnol. 2021 Jan;39(1):30-34. doi: 10.1038/s41587-020-0605-1. Epub 2020 Jul 20. Nat Biotechnol. 2021. PMID: 32690972 Free PMC article.

9

[No title available]

[No authors listed] [No authors listed] PMID: 33148787

10

PrInCE: an R/Bioconductor package for protein-protein interaction network inference from co-fractionation mass spectrometry data.

Skinnider MA, Cai C, Stacey RG, Foster LJ. Skinnider MA, et al. Bioinformatics. 2021 Sep 9;37(17):2775-2777. doi: 10.1093/bioinformatics/btab022. Bioinformatics. 2021. PMID: 33471077

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