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Exploring whole-genome duplicate gene retention with complex genetic interaction analysis.
Kuzmin E, VanderSluis B, Nguyen Ba AN, Wang W, Koch EN, Usaj M, Khmelinskii A, Usaj MM, van Leeuwen J, Kraus O, Tresenrider A, Pryszlak M, Hu MC, Varriano B, Costanzo M, Knop M, Moses A, Myers CL, Andrews BJ, Boone C. Kuzmin E, et al. Among authors: moses a. Science. 2020 Jun 26;368(6498):eaaz5667. doi: 10.1126/science.aaz5667. Science. 2020. PMID: 32586993 Free PMC article.
A quantitative literature-curated gold standard for kinase-substrate pairs.
Sharifpoor S, Nguyen Ba AN, Youn JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ. Sharifpoor S, et al. Genome Biol. 2011;12(4):R39. doi: 10.1186/gb-2011-12-4-r39. Epub 2011 Apr 14. Genome Biol. 2011. PMID: 21492431 Free PMC article.
Predicting kinase substrates using conservation of local motif density.
Lai AC, Nguyen Ba AN, Moses AM. Lai AC, et al. Bioinformatics. 2012 Apr 1;28(7):962-9. doi: 10.1093/bioinformatics/bts060. Epub 2012 Feb 1. Bioinformatics. 2012. PMID: 22302575
RESULTS: This study introduces a new method to predict kinase substrates by extracting evolutionary information from multiple sequence alignments in a manner that is tolerant to degenerate motif positioning. Given a known consensus, the new method (ConDens) c …
RESULTS: This study introduces a new method to predict kinase substrates by extracting evolutionary information from multiple sequenc …
A high-definition view of functional genetic variation from natural yeast genomes.
Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. Bergström A, et al. Among authors: moses am. Mol Biol Evol. 2014 Apr;31(4):872-88. doi: 10.1093/molbev/msu037. Epub 2014 Jan 14. Mol Biol Evol. 2014. PMID: 24425782 Free PMC article.
867 results