Kappel K - Search Results

1

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.

Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R. Kappel K, et al. Nat Methods. 2020 Jul;17(7):699-707. doi: 10.1038/s41592-020-0878-9. Epub 2020 Jul 2. Nat Methods. 2020. PMID: 32616928 Free PMC article.

2

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R. Kappel K, et al. Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30. Nat Methods. 2018. PMID: 30377372 Free PMC article.

3

Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution.

Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W. Zhang K, et al. Among authors: kappel k. Nat Commun. 2019 Dec 3;10(1):5511. doi: 10.1038/s41467-019-13494-7. Nat Commun. 2019. PMID: 31796736 Free PMC article.

4

Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution.

Su Z, Zhang K, Kappel K, Li S, Palo MZ, Pintilie GD, Rangan R, Luo B, Wei Y, Das R, Chiu W. Su Z, et al. Among authors: kappel k. Nature. 2021 Aug;596(7873):603-607. doi: 10.1038/s41586-021-03803-w. Epub 2021 Aug 11. Nature. 2021. PMID: 34381213 Free PMC article.

5

Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking.

Kappel K, Das R. Kappel K, et al. Structure. 2019 Jan 2;27(1):140-151.e5. doi: 10.1016/j.str.2018.10.001. Epub 2018 Nov 8. Structure. 2019. PMID: 30416038 Free PMC article.

6

Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM.

Li S, Palo MZ, Pintilie G, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R. Li S, et al. Among authors: kappel k. Proc Natl Acad Sci U S A. 2022 Sep 13;119(37):e2209146119. doi: 10.1073/pnas.2209146119. Epub 2022 Sep 6. Proc Natl Acad Sci U S A. 2022. PMID: 36067294 Free PMC article.

7

Auto-DRRAFTER: Automated RNA Modeling Based on Cryo-EM Density.

Ma H, Pham P, Luo B, Rangan R, Kappel K, Su Z, Das R. Ma H, et al. Among authors: kappel k. Methods Mol Biol. 2023;2568:193-211. doi: 10.1007/978-1-0716-2687-0_13. Methods Mol Biol. 2023. PMID: 36227570

8

Blind tests of RNA nearest-neighbor energy prediction.

Chou FC, Kladwang W, Kappel K, Das R. Chou FC, et al. Among authors: kappel k. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8430-5. doi: 10.1073/pnas.1523335113. Epub 2016 Jul 8. Proc Natl Acad Sci U S A. 2016. PMID: 27402765 Free PMC article.

9

Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis.

Parks JW, Kappel K, Das R, Stone MD. Parks JW, et al. Among authors: kappel k. RNA. 2017 Feb;23(2):175-188. doi: 10.1261/rna.058743.116. Epub 2016 Nov 15. RNA. 2017. PMID: 28096444 Free PMC article.

10

RNA 3D structure prediction guided by independent folding of homologous sequences.

Magnus M, Kappel K, Das R, Bujnicki JM. Magnus M, et al. Among authors: kappel k. BMC Bioinformatics. 2019 Oct 22;20(1):512. doi: 10.1186/s12859-019-3120-y. BMC Bioinformatics. 2019. PMID: 31640563 Free PMC article.

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